Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | ACG33_RS12030 | Genome accession | NZ_CP011971 |
| Coordinates | 2664283..2665500 (+) | Length | 405 a.a. |
| NCBI ID | WP_066921499.1 | Uniprot ID | A0A127FBL9 |
| Organism | Steroidobacter denitrificans strain DSM 18526 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2659283..2670500
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACG33_RS12015 (ACG33_12015) | - | 2659906..2661102 (+) | 1197 | WP_066921495.1 | isoprenylcysteine carboxylmethyltransferase family protein | - |
| ACG33_RS12020 (ACG33_12020) | - | 2661118..2662323 (+) | 1206 | WP_168160085.1 | serine hydrolase | - |
| ACG33_RS12025 (ACG33_12025) | pilB | 2662491..2664233 (+) | 1743 | WP_210399054.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ACG33_RS12030 (ACG33_12030) | pilC | 2664283..2665500 (+) | 1218 | WP_066921499.1 | type II secretion system F family protein | Machinery gene |
| ACG33_RS12035 (ACG33_12035) | - | 2665629..2666603 (+) | 975 | WP_066921501.1 | A24 family peptidase | - |
| ACG33_RS12040 (ACG33_12040) | coaE | 2666624..2667253 (+) | 630 | WP_066921503.1 | dephospho-CoA kinase | - |
| ACG33_RS12045 (ACG33_12045) | - | 2667407..2669053 (+) | 1647 | WP_210399055.1 | nodulation protein NfeD | - |
| ACG33_RS12050 (ACG33_12050) | - | 2669220..2669969 (+) | 750 | WP_066921505.1 | slipin family protein | - |
Sequence
Protein
Download Length: 405 a.a. Molecular weight: 44252.25 Da Isoelectric Point: 9.7610
>NTDB_id=149777 ACG33_RS12030 WP_066921499.1 2664283..2665500(+) (pilC) [Steroidobacter denitrificans strain DSM 18526]
MSQAASAQQFPFTWEGTDKKGKRIKGKMLAVSEAAVKADLRRQGVLAKRVRKETQLFKSGKKVTTEDIALFARQLATMLE
AGIPMVQCFDIVGNGADKPSMQKLVLAIKADIESGTTLHEALAKHPLHFDDLFVNLVEAGEQAGALENLLDKIATYKEKT
EALKKKIKKALFYPTAVLAVAVIVTVILLIFVIPQFESLFKGFGADLPAFTQMVINLSRFVQDQGWWMGLMVVGVGYAFF
YFKKRSRPMRRFLDRMLLKAPVIGPIMVKAAIARYARTLSTMFAAGVPLVEALTSVAGATGNIVYEEATLRIRDEVATGQ
RLQRSMEATDLFPNMVIQMISVGEESGSLDSMSAKVADFYEADVDAAVDGMSSLLEPLIMAILGVLVGGLVIAMYLPIFK
LGAVV
MSQAASAQQFPFTWEGTDKKGKRIKGKMLAVSEAAVKADLRRQGVLAKRVRKETQLFKSGKKVTTEDIALFARQLATMLE
AGIPMVQCFDIVGNGADKPSMQKLVLAIKADIESGTTLHEALAKHPLHFDDLFVNLVEAGEQAGALENLLDKIATYKEKT
EALKKKIKKALFYPTAVLAVAVIVTVILLIFVIPQFESLFKGFGADLPAFTQMVINLSRFVQDQGWWMGLMVVGVGYAFF
YFKKRSRPMRRFLDRMLLKAPVIGPIMVKAAIARYARTLSTMFAAGVPLVEALTSVAGATGNIVYEEATLRIRDEVATGQ
RLQRSMEATDLFPNMVIQMISVGEESGSLDSMSAKVADFYEADVDAAVDGMSSLLEPLIMAILGVLVGGLVIAMYLPIFK
LGAVV
Nucleotide
Download Length: 1218 bp
>NTDB_id=149777 ACG33_RS12030 WP_066921499.1 2664283..2665500(+) (pilC) [Steroidobacter denitrificans strain DSM 18526]
ATGTCACAAGCAGCATCTGCACAGCAATTCCCGTTCACCTGGGAAGGCACCGACAAGAAGGGCAAGCGCATCAAGGGCAA
GATGCTGGCGGTGTCGGAAGCGGCGGTCAAGGCCGACCTGCGCCGTCAGGGCGTGCTCGCGAAACGGGTGCGCAAGGAGA
CGCAACTCTTCAAGAGCGGCAAGAAGGTCACCACCGAGGACATCGCGCTGTTCGCCCGGCAGCTGGCCACCATGCTCGAG
GCCGGCATCCCGATGGTCCAATGCTTCGACATCGTCGGCAACGGCGCCGACAAGCCGTCGATGCAGAAGCTGGTGCTGGC
GATCAAGGCCGACATCGAATCAGGCACGACCTTGCACGAGGCCCTGGCCAAGCACCCGCTGCACTTCGACGATTTGTTCG
TCAACCTGGTCGAGGCCGGCGAACAGGCCGGTGCCCTGGAAAATCTGCTCGACAAGATCGCGACCTACAAGGAAAAAACC
GAGGCGCTCAAGAAAAAGATCAAGAAGGCCTTGTTCTACCCCACCGCGGTGCTGGCCGTGGCCGTGATCGTGACGGTCAT
CCTGCTGATTTTCGTGATCCCGCAGTTCGAAAGCCTGTTCAAGGGCTTCGGCGCCGATCTGCCGGCCTTCACGCAGATGG
TCATCAACCTGTCGCGCTTCGTGCAGGATCAGGGCTGGTGGATGGGGCTCATGGTGGTCGGCGTGGGGTATGCGTTCTTT
TATTTCAAGAAACGTTCCCGGCCGATGCGCCGCTTCCTGGATCGCATGCTGCTCAAGGCGCCGGTCATCGGCCCGATCAT
GGTGAAGGCCGCGATCGCCCGCTATGCGCGCACGCTGTCCACCATGTTCGCCGCCGGCGTGCCGCTGGTCGAGGCCCTGA
CCTCGGTCGCCGGCGCCACCGGTAACATCGTCTATGAAGAAGCCACCTTGCGCATCCGCGACGAAGTGGCCACCGGCCAG
CGGCTGCAACGCTCCATGGAAGCCACCGACCTGTTCCCCAACATGGTCATCCAGATGATCTCCGTCGGCGAGGAATCCGG
CTCGCTGGACTCCATGTCCGCCAAGGTGGCCGATTTCTACGAGGCCGATGTCGATGCGGCCGTCGATGGCATGAGCAGCC
TGCTCGAACCGCTGATCATGGCGATCCTGGGCGTGCTGGTCGGTGGCCTGGTCATCGCCATGTACCTGCCCATCTTCAAG
CTCGGCGCGGTCGTTTGA
ATGTCACAAGCAGCATCTGCACAGCAATTCCCGTTCACCTGGGAAGGCACCGACAAGAAGGGCAAGCGCATCAAGGGCAA
GATGCTGGCGGTGTCGGAAGCGGCGGTCAAGGCCGACCTGCGCCGTCAGGGCGTGCTCGCGAAACGGGTGCGCAAGGAGA
CGCAACTCTTCAAGAGCGGCAAGAAGGTCACCACCGAGGACATCGCGCTGTTCGCCCGGCAGCTGGCCACCATGCTCGAG
GCCGGCATCCCGATGGTCCAATGCTTCGACATCGTCGGCAACGGCGCCGACAAGCCGTCGATGCAGAAGCTGGTGCTGGC
GATCAAGGCCGACATCGAATCAGGCACGACCTTGCACGAGGCCCTGGCCAAGCACCCGCTGCACTTCGACGATTTGTTCG
TCAACCTGGTCGAGGCCGGCGAACAGGCCGGTGCCCTGGAAAATCTGCTCGACAAGATCGCGACCTACAAGGAAAAAACC
GAGGCGCTCAAGAAAAAGATCAAGAAGGCCTTGTTCTACCCCACCGCGGTGCTGGCCGTGGCCGTGATCGTGACGGTCAT
CCTGCTGATTTTCGTGATCCCGCAGTTCGAAAGCCTGTTCAAGGGCTTCGGCGCCGATCTGCCGGCCTTCACGCAGATGG
TCATCAACCTGTCGCGCTTCGTGCAGGATCAGGGCTGGTGGATGGGGCTCATGGTGGTCGGCGTGGGGTATGCGTTCTTT
TATTTCAAGAAACGTTCCCGGCCGATGCGCCGCTTCCTGGATCGCATGCTGCTCAAGGCGCCGGTCATCGGCCCGATCAT
GGTGAAGGCCGCGATCGCCCGCTATGCGCGCACGCTGTCCACCATGTTCGCCGCCGGCGTGCCGCTGGTCGAGGCCCTGA
CCTCGGTCGCCGGCGCCACCGGTAACATCGTCTATGAAGAAGCCACCTTGCGCATCCGCGACGAAGTGGCCACCGGCCAG
CGGCTGCAACGCTCCATGGAAGCCACCGACCTGTTCCCCAACATGGTCATCCAGATGATCTCCGTCGGCGAGGAATCCGG
CTCGCTGGACTCCATGTCCGCCAAGGTGGCCGATTTCTACGAGGCCGATGTCGATGCGGCCGTCGATGGCATGAGCAGCC
TGCTCGAACCGCTGATCATGGCGATCCTGGGCGTGCTGGTCGGTGGCCTGGTCATCGCCATGTACCTGCCCATCTTCAAG
CTCGGCGCGGTCGTTTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Legionella pneumophila strain ERS1305867 |
59.848 |
97.778 |
0.585 |
| pilC | Pseudomonas stutzeri DSM 10701 |
57.179 |
98.025 |
0.56 |
| pilC | Acinetobacter baumannii D1279779 |
55.802 |
100 |
0.558 |
| pilC | Acinetobacter baylyi ADP1 |
52.826 |
100 |
0.531 |
| pilG | Neisseria gonorrhoeae MS11 |
45.96 |
97.778 |
0.449 |
| pilG | Neisseria meningitidis 44/76-A |
45.477 |
98.272 |
0.447 |
| pilC | Vibrio cholerae strain A1552 |
42.222 |
100 |
0.422 |
| pilC | Vibrio campbellii strain DS40M4 |
41.667 |
97.778 |
0.407 |