Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   REIFOR_RS13220 Genome accession   NZ_CP011797
Coordinates   2887485..2888708 (+) Length   407 a.a.
NCBI ID   WP_100258012.1    Uniprot ID   A0A2K8KT34
Organism   Reinekea forsetii strain Hel1_31_D35     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2882485..2893708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  REIFOR_RS13200 (REIFOR_02654) nadC 2883396..2884253 (+) 858 WP_100258009.1 carboxylating nicotinate-nucleotide diphosphorylase -
  REIFOR_RS13205 (REIFOR_02655) - 2884259..2884747 (-) 489 WP_100258010.1 pilin -
  REIFOR_RS13210 (REIFOR_02656) - 2884886..2885449 (-) 564 WP_100258011.1 pilin -
  REIFOR_RS13215 (REIFOR_02657) pilB 2885780..2887471 (+) 1692 WP_100258788.1 type IV-A pilus assembly ATPase PilB Machinery gene
  REIFOR_RS13220 (REIFOR_02658) pilC 2887485..2888708 (+) 1224 WP_100258012.1 type II secretion system F family protein Machinery gene
  REIFOR_RS13225 (REIFOR_02659) pilD 2888708..2889580 (+) 873 WP_100258013.1 A24 family peptidase Machinery gene
  REIFOR_RS13230 (REIFOR_02660) coaE 2889577..2890173 (+) 597 WP_227003691.1 dephospho-CoA kinase -
  REIFOR_RS13235 (REIFOR_02661) - 2890185..2890394 (+) 210 WP_100258014.1 DNA gyrase inhibitor YacG -
  REIFOR_RS13240 (REIFOR_02662) argJ 2890457..2891680 (-) 1224 WP_100258015.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 43835.60 Da        Isoelectric Point: 9.4991

>NTDB_id=148751 REIFOR_RS13220 WP_100258012.1 2887485..2888708(+) (pilC) [Reinekea forsetii strain Hel1_31_D35]
MATATVKTSIFSYEGLDRNGKLKRGEISGTNPSFIKAELRKQGVIRVKKLAKKRKDIALFGGQKIGTSDIAVFTRQMATM
MKAGVPLMKSFEIVAEGLENKTMAVLVNKMAVSVSGGGGFASALREHPKQFDDLYCSLVDSGEQAGALETMLNRVALYQE
KSESVKKKVKSAMKYPATIMSIAAIVTAILLLKVVPVFANMFESFGADLPVPTQVVMDMSNWLQANGILLGIILVALFIG
FQQSHQRSRMFRHALQRLSVKLPVFGPIVYQSAMARYARTLSTTFAAGVPLVSALESAAGASGNIIYENAIMAVKNEVET
GSELAGSMKETGVFPAMLIQMVSIGEQSGALDDMLSKAAEIYEEEVDTLVDGLTSMMEPLIMAFLGIIVGGLVVAMYLPI
FQMGSVI

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=148751 REIFOR_RS13220 WP_100258012.1 2887485..2888708(+) (pilC) [Reinekea forsetii strain Hel1_31_D35]
ATGGCAACTGCAACAGTAAAGACCTCTATATTCTCCTACGAAGGGCTCGATCGTAACGGCAAGCTAAAACGCGGTGAGAT
TAGCGGCACGAACCCCTCTTTTATTAAAGCCGAACTGCGCAAACAGGGTGTTATTCGGGTTAAAAAACTGGCCAAAAAAC
GCAAAGACATAGCCCTCTTCGGCGGCCAAAAGATCGGTACCAGCGATATCGCCGTGTTCACCCGGCAAATGGCGACCATG
ATGAAGGCGGGTGTGCCGCTTATGAAATCCTTCGAGATCGTCGCCGAAGGACTGGAAAATAAGACCATGGCGGTCTTAGT
AAACAAGATGGCCGTTAGTGTCTCCGGCGGCGGCGGCTTTGCCAGTGCCCTACGGGAACACCCCAAGCAGTTCGACGATC
TCTATTGCTCACTGGTTGACTCCGGCGAACAGGCCGGCGCATTGGAGACCATGCTCAATCGGGTCGCGCTGTATCAGGAA
AAGTCCGAAAGCGTGAAAAAGAAGGTAAAATCGGCCATGAAGTACCCGGCGACGATCATGTCCATCGCCGCCATTGTCAC
GGCTATCCTATTGCTCAAGGTTGTGCCAGTGTTTGCCAATATGTTTGAAAGCTTCGGCGCCGACCTGCCGGTACCGACCC
AAGTAGTGATGGATATGTCCAATTGGCTGCAGGCGAACGGGATTTTGTTGGGGATTATACTGGTGGCCTTGTTTATCGGG
TTTCAGCAGTCTCATCAGCGTTCCCGGATGTTTCGTCATGCCTTACAGCGCCTATCGGTTAAGCTGCCGGTATTCGGCCC
TATCGTTTATCAATCGGCCATGGCCCGTTATGCGCGCACCCTGTCGACTACCTTTGCCGCCGGTGTGCCGTTGGTCAGCG
CCTTGGAAAGCGCGGCCGGTGCTTCGGGCAATATCATCTATGAAAATGCCATCATGGCAGTAAAGAACGAGGTCGAAACC
GGCTCCGAACTGGCCGGTTCGATGAAGGAAACCGGCGTCTTCCCGGCCATGCTGATTCAGATGGTCTCTATAGGTGAACA
GTCTGGCGCGCTCGATGATATGTTGAGCAAGGCCGCTGAAATCTATGAAGAGGAGGTCGATACCCTGGTCGATGGCCTGA
CCTCGATGATGGAACCTTTGATTATGGCCTTCTTGGGCATTATAGTCGGTGGTCTGGTGGTGGCAATGTACCTACCGATC
TTCCAAATGGGTTCCGTTATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(73-196)

Type II secretion system (T2SS), protein F (T2SSF)

(278-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K8KT34

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

58.145

98.034

0.57
  pilC Pseudomonas stutzeri DSM 10701

55.583

100

0.563
  pilC Acinetobacter baylyi ADP1

55.746

100

0.56
  pilC Legionella pneumophila strain ERS1305867

47.859

97.543

0.467
  pilG Neisseria gonorrhoeae MS11

41.769

100

0.418
  pilG Neisseria meningitidis 44/76-A

41.278

100

0.413
  pilC Vibrio campbellii strain DS40M4

39.547

97.543

0.386
  pilC Vibrio cholerae strain A1552

38.424

99.754

0.383

Multiple sequence alignment