Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FORC16_RS11930 Genome accession   NZ_CP011775
Coordinates   2646003..2647229 (+) Length   408 a.a.
NCBI ID   WP_045618629.1    Uniprot ID   A0AAN1PMC1
Organism   Vibrio vulnificus strain FORC_016     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2641003..2652229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC16_RS11910 (FORC16_2370) ampD 2642040..2642612 (-) 573 WP_060530795.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  FORC16_RS11915 (FORC16_2371) nadC 2642705..2643592 (+) 888 WP_060530792.1 carboxylating nicotinate-nucleotide diphosphorylase -
  FORC16_RS11920 (FORC16_2372) - 2643812..2644264 (+) 453 WP_060530791.1 pilin -
  FORC16_RS11925 (FORC16_2373) pilB 2644269..2645954 (+) 1686 WP_060530787.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FORC16_RS11930 (FORC16_2374) pilC 2646003..2647229 (+) 1227 WP_045618629.1 type II secretion system F family protein Machinery gene
  FORC16_RS11935 (FORC16_2375) pilD 2647323..2648192 (+) 870 WP_013571138.1 prepilin peptidase Machinery gene
  FORC16_RS11940 (FORC16_2376) coaE 2648194..2648802 (+) 609 WP_060530785.1 dephospho-CoA kinase -
  FORC16_RS11945 (FORC16_2377) zapD 2648835..2649575 (+) 741 WP_011079546.1 cell division protein ZapD -
  FORC16_RS11950 (FORC16_2378) yacG 2649638..2649832 (+) 195 WP_060530783.1 DNA gyrase inhibitor YacG -
  FORC16_RS11955 (FORC16_2379) rplS 2650072..2650425 (-) 354 WP_060530781.1 50S ribosomal protein L19 -
  FORC16_RS11960 (FORC16_2380) trmD 2650467..2651216 (-) 750 WP_011079543.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  FORC16_RS11965 (FORC16_2381) rimM 2651244..2651792 (-) 549 WP_011079542.1 ribosome maturation factor RimM -
  FORC16_RS11970 (FORC16_2382) rpsP 2651808..2652056 (-) 249 WP_011079541.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45253.53 Da        Isoelectric Point: 10.3244

>NTDB_id=148627 FORC16_RS11930 WP_045618629.1 2646003..2647229(+) (pilC) [Vibrio vulnificus strain FORC_016]
MKLKTHSQIKNYQWKGINGAGKKVSGNTLALTELEVRDKLKMQHIQIKKIKKSSVSVFTRLSHKVKGKDITLLTRQLATM
LTTGVPILQSLKLVADNHRKAEMKSILANVSKAVEAGTPLSKALRSASPQFDGIYVDLVATGEQSGNLDQVFERLAFYRE
KNEQLRAKVIKALIYPCMVVLVALGVSYLMLTQVIPEFRKMFTGFGAELPWFTQKVLDLSDFVQAYSSWFFITLFSAIYL
LRGLSKKSPAFRLKMSRLSLKIPVIGGVLSKAAIAKFSRTLATSFSAGIPILTSLKTTSKTAGNLHYQYAIEDVYRDTAA
GMPMYIAMRNSLAFPELVLQMVMIGEESGQMDDMLNKIATIYEFEVDNTVDNLGKILEPLIIVFLGVVVGGLVTAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=148627 FORC16_RS11930 WP_045618629.1 2646003..2647229(+) (pilC) [Vibrio vulnificus strain FORC_016]
ATGAAGCTTAAAACCCATTCACAAATCAAAAACTATCAATGGAAAGGGATTAATGGAGCTGGAAAAAAAGTCTCCGGCAA
CACGCTGGCGCTCACCGAGCTTGAAGTGCGTGATAAGCTGAAAATGCAGCATATCCAGATCAAAAAGATCAAGAAATCCA
GTGTGTCAGTCTTTACAAGGTTAAGCCATAAAGTCAAAGGCAAAGACATCACACTGCTTACCCGCCAACTCGCCACCATG
CTGACCACTGGTGTCCCTATTCTCCAATCACTCAAATTGGTTGCTGACAACCATCGCAAAGCCGAGATGAAGTCGATTTT
AGCCAATGTGAGCAAAGCCGTTGAAGCGGGCACGCCGTTATCGAAAGCGCTTCGCAGTGCCAGTCCACAATTCGATGGCA
TTTATGTTGACTTAGTCGCCACTGGTGAACAATCGGGTAATCTTGATCAAGTTTTTGAACGCCTCGCTTTTTATCGGGAA
AAAAATGAGCAGTTGCGAGCAAAAGTGATCAAAGCGCTGATTTATCCCTGCATGGTCGTGCTGGTCGCGTTGGGAGTCTC
TTATTTAATGCTGACTCAGGTTATTCCCGAGTTTCGCAAAATGTTCACCGGATTCGGCGCAGAACTGCCTTGGTTTACGC
AAAAAGTCTTAGACCTGTCTGATTTTGTGCAAGCCTACAGCAGTTGGTTTTTCATTACGTTGTTCAGCGCTATCTATTTA
CTTCGCGGTCTAAGCAAAAAATCACCCGCATTTCGCTTAAAAATGTCACGCTTGAGTTTAAAAATCCCTGTAATTGGCGG
GGTCTTATCCAAAGCGGCGATTGCCAAATTTAGCCGCACATTGGCCACCAGCTTCAGTGCAGGTATCCCGATCCTCACCA
GTTTAAAAACCACCAGTAAAACCGCTGGTAATCTACATTACCAATATGCGATTGAAGATGTTTATCGTGACACCGCAGCC
GGGATGCCAATGTACATCGCCATGCGCAACAGCCTTGCTTTCCCAGAATTGGTGCTGCAAATGGTGATGATTGGTGAAGA
ATCTGGCCAAATGGACGATATGCTGAACAAGATTGCCACCATCTATGAGTTTGAAGTGGATAACACCGTCGACAACCTCG
GTAAAATTCTCGAGCCGTTGATCATCGTCTTTCTTGGCGTTGTCGTCGGCGGATTGGTCACCGCAATGTACTTGCCGATC
TTTAATTTAATGAGTGTTCTGGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

78.5

98.039

0.77
  pilC Vibrio campbellii strain DS40M4

74.813

98.284

0.735
  pilC Pseudomonas stutzeri DSM 10701

41.337

99.02

0.409
  pilG Neisseria gonorrhoeae MS11

41.045

98.529

0.404
  pilG Neisseria meningitidis 44/76-A

40.796

98.529

0.402
  pilC Acinetobacter baumannii D1279779

39.756

100

0.4
  pilC Acinetobacter baylyi ADP1

40.602

97.794

0.397
  pilC Legionella pneumophila strain ERS1305867

40.099

99.02

0.397

Multiple sequence alignment