Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PDR5_RS24510 Genome accession   NZ_CP011566
Coordinates   5459291..5460508 (+) Length   405 a.a.
NCBI ID   WP_064599489.1    Uniprot ID   -
Organism   Pseudomonas sp. DR 5-09     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5454291..5465508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PDR5_RS24490 (PDR5_49290) - 5455807..5456103 (+) 297 WP_064599485.1 DUF2845 domain-containing protein -
  PDR5_RS24495 (PDR5_49300) - 5456271..5456627 (-) 357 WP_011335977.1 BON domain-containing protein -
  PDR5_RS24500 (PDR5_49310) pilA 5456924..5457361 (-) 438 WP_064382076.1 pilin Machinery gene
  PDR5_RS24505 (PDR5_49320) pilB 5457588..5459288 (+) 1701 WP_064599487.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PDR5_RS24510 (PDR5_49330) pilC 5459291..5460508 (+) 1218 WP_064599489.1 type II secretion system F family protein Machinery gene
  PDR5_RS24515 (PDR5_49340) pilD 5460510..5461382 (+) 873 WP_064599491.1 A24 family peptidase Machinery gene
  PDR5_RS24520 (PDR5_49350) coaE 5461379..5462002 (+) 624 WP_064599493.1 dephospho-CoA kinase -
  PDR5_RS24525 (PDR5_49360) yacG 5461999..5462199 (+) 201 WP_064599495.1 DNA gyrase inhibitor YacG -
  PDR5_RS24530 (PDR5_49370) - 5462205..5462420 (-) 216 WP_007959584.1 hypothetical protein -
  PDR5_RS24535 (PDR5_49380) - 5462486..5463175 (-) 690 WP_064599497.1 energy-coupling factor ABC transporter permease -
  PDR5_RS24540 (PDR5_49390) - 5463309..5463935 (+) 627 WP_007959580.1 DUF1780 domain-containing protein -
  PDR5_RS24545 (PDR5_49400) - 5463932..5464459 (+) 528 WP_064599499.1 MOSC domain-containing protein -
  PDR5_RS24550 (PDR5_49410) - 5464511..5464684 (+) 174 WP_042561123.1 DUF3094 family protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44032.65 Da        Isoelectric Point: 10.1093

>NTDB_id=146913 PDR5_RS24510 WP_064599489.1 5459291..5460508(+) (pilC) [Pseudomonas sp. DR 5-09]
MAVKAAKVSVYAWEGTDRKGSKVTGELSGQNPALVKAQLRKQGINPGKVRKKSASLLSFGKRIKAQDIALFTRQMATMMK
AGVPLLQSFDIIGEGFENPAMRKLVDEVKQEVAAGNSFAAALRKKPQYFDELYCNLVDAGEQSGALDTLLERVATYKEKS
ESLKAKIKKAMTYPSAVVLVAAVVTGILLVKVVPQFQSVFSGFGAELPAFTLMVISLSEFMQQWWWAILGALVAAFFGTR
HALKKSQALRDRRDAWFLKLPLVGTLMYKSAVARFARTLSTTFAAGVPLVEALDSVAGATGNVVFKRAVLRIRQDVSTGM
QLNFSMRSTGIFPNMAVQMTAIGEESGALDEMLDKVAGFYEDEVDNMVDNLTSLMEPFIMVVLGVIVGGLVVAMYLPIFQ
LGSAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=146913 PDR5_RS24510 WP_064599489.1 5459291..5460508(+) (pilC) [Pseudomonas sp. DR 5-09]
ATGGCGGTCAAGGCAGCAAAAGTCAGCGTCTACGCCTGGGAAGGCACGGACCGTAAAGGCAGCAAGGTAACCGGCGAGTT
GAGCGGCCAAAACCCCGCACTGGTCAAGGCTCAGTTGCGCAAGCAAGGCATCAACCCCGGCAAGGTGCGCAAGAAATCCG
CCTCGCTGCTGAGCTTCGGCAAGCGCATCAAGGCCCAGGACATTGCCCTGTTCACCCGGCAGATGGCGACCATGATGAAG
GCCGGCGTACCGCTGTTGCAGTCGTTCGACATCATTGGCGAAGGCTTCGAAAACCCGGCCATGCGCAAGCTGGTGGACGA
GGTGAAACAGGAGGTCGCCGCCGGTAACAGCTTCGCCGCCGCGCTGCGCAAGAAGCCGCAATATTTCGACGAGTTGTACT
GCAACCTGGTGGATGCCGGCGAGCAGTCCGGCGCCCTCGACACCCTGCTGGAACGGGTCGCGACCTACAAGGAAAAGAGC
GAAAGCCTCAAGGCCAAGATCAAGAAGGCCATGACCTACCCGTCGGCCGTAGTGCTGGTGGCGGCGGTGGTCACCGGGAT
TCTGCTGGTCAAGGTGGTGCCGCAGTTTCAGTCGGTGTTCTCCGGCTTCGGTGCCGAACTGCCGGCCTTCACGCTGATGG
TGATCAGCCTGTCCGAATTCATGCAGCAATGGTGGTGGGCGATTCTCGGTGCGCTGGTGGCCGCGTTTTTCGGCACCCGC
CATGCCCTGAAAAAATCCCAGGCCCTGCGCGATCGACGCGACGCCTGGTTTCTCAAGCTGCCGCTGGTGGGCACATTGAT
GTACAAGTCCGCCGTGGCGCGGTTTGCCCGGACCCTGTCGACTACCTTCGCCGCCGGTGTGCCGCTGGTGGAAGCGCTGG
ACTCGGTGGCCGGTGCCACCGGCAACGTGGTGTTCAAGCGTGCCGTGCTGCGCATCCGCCAGGACGTCTCTACCGGCATG
CAGCTGAATTTCTCGATGCGCTCCACCGGCATCTTTCCGAACATGGCGGTGCAGATGACCGCCATCGGCGAAGAGTCCGG
CGCACTGGACGAGATGCTCGACAAGGTCGCAGGTTTCTATGAGGACGAAGTGGACAACATGGTCGACAACCTTACCAGCC
TGATGGAGCCGTTCATCATGGTGGTGCTGGGGGTGATCGTCGGCGGTCTGGTGGTGGCGATGTACCTGCCGATCTTCCAA
CTCGGCTCAGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

75.309

100

0.753
  pilC Acinetobacter baylyi ADP1

59.559

100

0.6
  pilC Acinetobacter baumannii D1279779

59.314

100

0.598
  pilC Legionella pneumophila strain ERS1305867

53.75

98.765

0.531
  pilC Vibrio cholerae strain A1552

44.697

97.778

0.437
  pilG Neisseria gonorrhoeae MS11

43.424

99.506

0.432
  pilG Neisseria meningitidis 44/76-A

42.928

99.506

0.427
  pilC Vibrio campbellii strain DS40M4

41.379

100

0.415
  pilC Thermus thermophilus HB27

39.098

98.519

0.385

Multiple sequence alignment