Detailed information NTG0146914

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PDR5_RS24515
• Genome accession: NZ_CP011566
• Coordinates: 5460510..5461382 (+)
• Length: 290 a.a.
• NCBI ID: WP_064599491.1
• Uniprot ID: -
• Organism: Pseudomonas sp. DR 5-09
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5455510..5466382

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PDR5_RS24490 (PDR5_49290)	-	5455807..5456103 (+)	297	WP_064599485.1	DUF2845 domain-containing protein	-
PDR5_RS24495 (PDR5_49300)	-	5456271..5456627 (-)	357	WP_011335977.1	BON domain-containing protein	-
PDR5_RS24500 (PDR5_49310)	pilA	5456924..5457361 (-)	438	WP_064382076.1	pilin	Machinery gene
PDR5_RS24505 (PDR5_49320)	pilB	5457588..5459288 (+)	1701	WP_064599487.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PDR5_RS24510 (PDR5_49330)	pilC	5459291..5460508 (+)	1218	WP_064599489.1	type II secretion system F family protein	Machinery gene
PDR5_RS24515 (PDR5_49340)	pilD	5460510..5461382 (+)	873	WP_064599491.1	A24 family peptidase	Machinery gene
PDR5_RS24520 (PDR5_49350)	coaE	5461379..5462002 (+)	624	WP_064599493.1	dephospho-CoA kinase	-
PDR5_RS24525 (PDR5_49360)	yacG	5461999..5462199 (+)	201	WP_064599495.1	DNA gyrase inhibitor YacG	-
PDR5_RS24530 (PDR5_49370)	-	5462205..5462420 (-)	216	WP_007959584.1	hypothetical protein	-
PDR5_RS24535 (PDR5_49380)	-	5462486..5463175 (-)	690	WP_064599497.1	energy-coupling factor ABC transporter permease	-
PDR5_RS24540 (PDR5_49390)	-	5463309..5463935 (+)	627	WP_007959580.1	DUF1780 domain-containing protein	-
PDR5_RS24545 (PDR5_49400)	-	5463932..5464459 (+)	528	WP_064599499.1	MOSC domain-containing protein	-
PDR5_RS24550 (PDR5_49410)	-	5464511..5464684 (+)	174	WP_042561123.1	DUF3094 family protein	-
PDR5_RS24555 (PDR5_49420)	-	5464748..5466046 (+)	1299	WP_064599500.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32178.54 Da
• Isoelectric Point: 7.6641

>NTDB_id=146914 PDR5_RS24515 WP_064599491.1 5460510..5461382(+) (pilD) [Pseudomonas sp. DR 5-09]
MPIDELLSLYPLAFVVAALLLGLVVGSFLNVLIWRLPKMLEREWRQQAHDVLGLPGESPLPTYNLMLPHSQCPHCGHRIR
AWENIPLLSYVCLRGRCSSCSAPISKRYPLTELACGLLSAFIAWHLGFGWPACLLIVLTWGLLAMSLIDTEHQLLPDVLV
LPLLWLGLIVNSFELFVPLHDALWGAVLGYMALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AVLGVILLKLRDQKTSTPIPFGPYLAIAGWIALLWGGQITGFYWQFVGLK

Nucleotide

• Length: 873 bp

>NTDB_id=146914 PDR5_RS24515 WP_064599491.1 5460510..5461382(+) (pilD) [Pseudomonas sp. DR 5-09]
ATGCCTATCGACGAACTCCTCAGCCTGTATCCGCTGGCCTTTGTCGTCGCCGCCCTGCTGCTGGGGCTGGTGGTGGGCAG
TTTCCTCAACGTGTTGATCTGGCGCCTGCCGAAAATGCTCGAGCGCGAATGGCGCCAGCAGGCTCACGATGTACTGGGCC
TGCCCGGTGAATCGCCATTGCCCACCTACAACCTGATGCTCCCGCACTCGCAATGCCCCCACTGTGGCCACCGGATCCGT
GCGTGGGAAAACATTCCCCTGTTGAGTTACGTGTGCCTGCGCGGGCGCTGTTCAAGTTGCAGCGCACCGATCAGCAAGCG
TTACCCGCTGACCGAACTGGCCTGTGGCCTGCTCTCTGCGTTCATCGCCTGGCACCTGGGTTTCGGCTGGCCGGCGTGCC
TGTTGATCGTGCTGACCTGGGGCCTGTTGGCCATGAGCCTGATCGACACCGAACATCAATTGCTGCCCGACGTGCTGGTG
CTGCCGCTGCTGTGGCTGGGGCTGATCGTCAACAGCTTCGAGCTGTTCGTGCCGCTGCACGACGCCCTGTGGGGCGCGGT
GCTGGGCTATATGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAACTGCTCACCGGCAAGGACGGCATCGGTCACGGCGATT
TCAAGCTGCTGGCGCTGCTCGGGGCCTGGGGCGGCTGGCAGATTCTGCCGCTGACCATCCTCTTGTCCTCGCTGGTGGGC
GCCGTGCTCGGGGTGATTTTGCTCAAGCTGCGCGACCAGAAAACCTCGACGCCGATCCCCTTCGGCCCGTATCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGGCTTCTATTGGCAGTTTGTCGGTTTGAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.837	97.241	0.514
pilD	Vibrio campbellii strain DS40M4	51.418	97.241	0.5
pilD	Acinetobacter baumannii D1279779	47.81	94.483	0.452
pilD	Acinetobacter nosocomialis M2	47.81	94.483	0.452
pilD	Neisseria gonorrhoeae MS11	47.778	93.103	0.445