Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABA45_RS04590 Genome accession   NZ_CP011494
Coordinates   1013645..1014865 (-) Length   406 a.a.
NCBI ID   WP_048384501.1    Uniprot ID   A0A0H4I2C6
Organism   Marinobacter psychrophilus strain 20041     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1008645..1019865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABA45_RS04560 (ABA45_04560) - 1009210..1009770 (-) 561 WP_048384496.1 YfaZ family outer membrane protein -
  ABA45_RS04565 (ABA45_04565) yacG 1009985..1010173 (-) 189 WP_048384497.1 DNA gyrase inhibitor YacG -
  ABA45_RS04570 (ABA45_04570) tsaA 1010247..1011014 (-) 768 WP_048384498.1 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO -
  ABA45_RS04575 (ABA45_04575) - 1011020..1012129 (-) 1110 WP_198147056.1 hypothetical protein -
  ABA45_RS04580 (ABA45_04580) coaE 1012101..1012709 (-) 609 WP_048384499.1 dephospho-CoA kinase -
  ABA45_RS04585 (ABA45_04585) pilD 1012766..1013641 (-) 876 WP_048384500.1 A24 family peptidase Machinery gene
  ABA45_RS04590 (ABA45_04590) pilC 1013645..1014865 (-) 1221 WP_048384501.1 type II secretion system F family protein Machinery gene
  ABA45_RS04595 (ABA45_04595) pilB 1014868..1016583 (-) 1716 WP_048384502.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABA45_RS04600 (ABA45_04600) - 1017159..1017602 (-) 444 WP_048384503.1 pilin -
  ABA45_RS04605 (ABA45_04605) - 1017671..1019461 (-) 1791 WP_048384504.1 PglL family O-oligosaccharyltransferase -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44384.31 Da        Isoelectric Point: 9.7275

>NTDB_id=146337 ABA45_RS04590 WP_048384501.1 1013645..1014865(-) (pilC) [Marinobacter psychrophilus strain 20041]
MAQKANKLESYVWEGKDRRGNKAKGELSGVSLALAKAQLRKQGIVPDKVKKKAKPLFGGSKKITPFDIAMLTRQLATMMK
AGVPLVQSFDIVADGLENKGLQELVMSVRNDIASGNSFAGSLRKHPRQFDDLYCNLVDSGEKAGALEKMLDRIATYMEKT
EILKKKVKKAMTYPIAVVVVAIVVTAILLVKVVPQFESLFNGFGAELPVFTQMVVRLSEWMQTWWFVVLLGIVGTIVLFK
ESKRRSQKFSDVVDKYVLKVPVMGEILDKSAVAKFGRVLSTTFAAGVPLVDALESVAGATGNAVYRDAIMRIRNDVSGGT
QLQASMRAQDVFPVMAVQLTAIGEESGNLDEMLEKVAEHYEAVVDDMVDNLTALMEPMIMSVLGVLVGGLIIAMYLPIFQ
MGQVVG

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=146337 ABA45_RS04590 WP_048384501.1 1013645..1014865(-) (pilC) [Marinobacter psychrophilus strain 20041]
ATGGCCCAAAAAGCGAATAAACTGGAATCCTATGTATGGGAAGGCAAAGATCGCCGCGGCAACAAAGCCAAGGGTGAGCT
GTCTGGCGTAAGCTTGGCTTTGGCCAAGGCCCAGTTACGCAAACAAGGTATAGTTCCAGACAAGGTGAAAAAGAAAGCCA
AGCCGTTGTTCGGTGGCAGCAAAAAAATTACCCCCTTTGACATTGCCATGCTCACCCGACAACTGGCCACCATGATGAAA
GCCGGTGTGCCCTTGGTGCAAAGCTTTGACATTGTGGCCGATGGGTTGGAAAACAAAGGCCTACAGGAACTGGTGATGTC
GGTTCGGAACGACATTGCTTCTGGTAACAGCTTCGCCGGATCGTTGCGTAAACACCCTCGCCAATTTGACGACTTGTACT
GCAACCTGGTGGATTCCGGCGAAAAGGCCGGTGCGCTCGAGAAAATGCTCGACCGTATCGCCACTTATATGGAAAAAACA
GAAATTCTGAAGAAAAAAGTCAAGAAAGCGATGACTTACCCGATCGCCGTTGTGGTGGTTGCGATCGTGGTAACGGCTAT
ATTGCTGGTAAAAGTAGTTCCGCAATTTGAATCGCTTTTTAACGGTTTTGGTGCAGAGCTGCCAGTGTTTACCCAGATGG
TGGTACGCCTGTCAGAATGGATGCAGACATGGTGGTTCGTAGTGCTACTAGGCATTGTCGGCACCATCGTTTTATTCAAA
GAGTCAAAACGGCGGTCACAGAAGTTTTCAGATGTTGTCGACAAATATGTGCTGAAAGTGCCGGTTATGGGTGAAATTCT
GGACAAATCCGCCGTCGCGAAGTTTGGCCGGGTGTTATCAACAACGTTCGCAGCCGGTGTTCCCCTTGTAGATGCTCTTG
AATCCGTTGCGGGAGCTACCGGCAACGCGGTTTATCGCGATGCCATCATGCGCATTCGCAATGACGTTTCCGGCGGAACC
CAGCTTCAAGCCTCTATGCGGGCGCAGGACGTGTTTCCGGTGATGGCGGTTCAGCTGACGGCGATTGGCGAGGAATCTGG
TAATCTGGACGAGATGCTGGAAAAAGTGGCCGAGCACTACGAAGCCGTAGTGGATGACATGGTAGACAACCTGACTGCGC
TGATGGAGCCAATGATTATGTCGGTATTGGGCGTGCTGGTGGGTGGTTTGATTATCGCCATGTACCTGCCAATCTTCCAA
ATGGGCCAGGTTGTTGGGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-397)

Type II secretion system (T2SS), protein F (T2SSF)

(72-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H4I2C6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

67.654

99.754

0.675
  pilC Acinetobacter baumannii D1279779

57.531

99.754

0.574
  pilC Acinetobacter baylyi ADP1

57.143

100

0.571
  pilC Legionella pneumophila strain ERS1305867

53.695

100

0.537
  pilG Neisseria gonorrhoeae MS11

42.963

99.754

0.429
  pilG Neisseria meningitidis 44/76-A

42.611

100

0.426
  pilC Vibrio campbellii strain DS40M4

39.803

100

0.399
  pilC Vibrio cholerae strain A1552

39.75

98.522

0.392

Multiple sequence alignment