Detailed information NTG0146336

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABA45_RS04585
• Genome accession: NZ_CP011494
• Coordinates: 1012766..1013641 (-)
• Length: 291 a.a.
• NCBI ID: WP_048384500.1
• Uniprot ID: A0A0H4HYP0
• Organism: Marinobacter psychrophilus strain 20041
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1007766..1018641

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABA45_RS04555 (ABA45_04555)	-	1008142..1009071 (-)	930	WP_048384495.1	glucosaminidase domain-containing protein	-
ABA45_RS04560 (ABA45_04560)	-	1009210..1009770 (-)	561	WP_048384496.1	YfaZ family outer membrane protein	-
ABA45_RS04565 (ABA45_04565)	yacG	1009985..1010173 (-)	189	WP_048384497.1	DNA gyrase inhibitor YacG	-
ABA45_RS04570 (ABA45_04570)	tsaA	1010247..1011014 (-)	768	WP_048384498.1	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	-
ABA45_RS04575 (ABA45_04575)	-	1011020..1012129 (-)	1110	WP_198147056.1	hypothetical protein	-
ABA45_RS04580 (ABA45_04580)	coaE	1012101..1012709 (-)	609	WP_048384499.1	dephospho-CoA kinase	-
ABA45_RS04585 (ABA45_04585)	pilD	1012766..1013641 (-)	876	WP_048384500.1	A24 family peptidase	Machinery gene
ABA45_RS04590 (ABA45_04590)	pilC	1013645..1014865 (-)	1221	WP_048384501.1	type II secretion system F family protein	Machinery gene
ABA45_RS04595 (ABA45_04595)	pilB	1014868..1016583 (-)	1716	WP_048384502.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ABA45_RS04600 (ABA45_04600)	-	1017159..1017602 (-)	444	WP_048384503.1	pilin	-

Sequence

Protein

• Length: 291 a.a.
• Molecular weight: 32058.42 Da
• Isoelectric Point: 7.4731

>NTDB_id=146336 ABA45_RS04585 WP_048384500.1 1012766..1013641(-) (pilD) [Marinobacter psychrophilus strain 20041]
MVDLSILLDTPWLLYTMVAFVSLCIGSFLNVVIFRLPAMMQQEWRCQCEELLEVPGTKREPAKVLSLSKPASTCPHCGHG
IRAWQNVPVISYLVLKGKCANCSKPISARYPIIELATAVFSVLTVYLLGPTPAALWALLLVWALVALTMIDFDTQLLPDS
ITLPLLWLGLIVNYFGQLVPFKEAFWGAIVGYLALWSVYWLFKLATGKEGMGYGDFKLLAALGAWLGWTLLPAVILLSSV
VGAAVGIALIVFKQQGREVPMPFGPYLATAGLLCLWFGDEIVSVWFRFLGV

Nucleotide

• Length: 876 bp

>NTDB_id=146336 ABA45_RS04585 WP_048384500.1 1012766..1013641(-) (pilD) [Marinobacter psychrophilus strain 20041]
ATGGTTGATTTAAGCATTCTTCTGGATACACCCTGGTTGCTGTACACCATGGTTGCATTTGTTTCTTTGTGCATCGGCAG
TTTTCTGAACGTGGTTATTTTTCGCCTGCCGGCGATGATGCAGCAGGAGTGGCGCTGCCAGTGTGAAGAGCTGTTGGAAG
TGCCGGGGACCAAGAGGGAACCGGCGAAGGTGTTGAGCCTGTCAAAGCCAGCTTCTACCTGCCCCCACTGCGGCCACGGT
ATTCGCGCCTGGCAGAATGTACCGGTTATCAGCTACCTGGTACTGAAAGGCAAATGCGCCAATTGCAGCAAACCGATTTC
AGCGCGCTACCCGATTATTGAGTTAGCGACAGCGGTGTTCTCGGTACTTACCGTGTACCTGCTGGGACCAACGCCTGCGG
CGCTTTGGGCATTATTGCTGGTGTGGGCGCTGGTGGCGCTGACGATGATTGATTTTGATACTCAACTGCTGCCAGACTCT
ATCACCCTACCCCTGCTTTGGCTGGGGCTGATTGTGAATTATTTTGGCCAGCTGGTGCCTTTTAAAGAGGCTTTCTGGGG
CGCGATAGTCGGTTACCTAGCGCTCTGGTCGGTTTACTGGCTGTTCAAGCTGGCTACCGGCAAGGAAGGCATGGGCTACG
GCGATTTCAAGCTGCTGGCAGCGTTGGGCGCCTGGCTGGGTTGGACGTTATTGCCGGCGGTTATTCTGTTATCCTCTGTT
GTGGGCGCAGCCGTTGGTATAGCCTTGATAGTGTTTAAACAGCAAGGCCGAGAGGTACCCATGCCATTTGGGCCTTATTT
AGCCACAGCAGGCTTGCTGTGCTTATGGTTTGGTGATGAAATTGTGAGTGTGTGGTTCCGCTTTCTTGGTGTGTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

3D structure

• AlphaFold DB: A0A0H4HYP0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	55.109	94.158	0.519
pilD	Acinetobacter baumannii D1279779	54.779	93.471	0.512
pilD	Vibrio campbellii strain DS40M4	52.158	95.533	0.498
pilD	Vibrio cholerae strain A1552	51.254	95.876	0.491
pilD	Neisseria gonorrhoeae MS11	47.687	96.564	0.46