Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   F506_RS00630 Genome accession   NZ_CP011409
Coordinates   144800..146002 (-) Length   400 a.a.
NCBI ID   WP_053194814.1    Uniprot ID   -
Organism   Herbaspirillum hiltneri N3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 139800..151002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F506_RS00600 (F506_00600) - 140824..141699 (+) 876 WP_053194804.1 ATP-binding protein -
  F506_RS00605 (F506_00605) - 141699..142115 (+) 417 WP_053194806.1 NUDIX domain-containing protein -
  F506_RS00610 (F506_00610) yacG 142131..142319 (-) 189 WP_053194808.1 DNA gyrase inhibitor YacG -
  F506_RS00615 (F506_00615) zapD 142386..143141 (-) 756 WP_053194809.1 cell division protein ZapD -
  F506_RS00620 (F506_00620) coaE 143284..143934 (-) 651 WP_053194810.1 dephospho-CoA kinase -
  F506_RS00625 (F506_00625) pilD 143934..144800 (-) 867 WP_053194812.1 A24 family peptidase Machinery gene
  F506_RS00630 (F506_00630) pilC 144800..146002 (-) 1203 WP_053194814.1 type II secretion system F family protein Machinery gene
  F506_RS00635 (F506_00635) - 146025..147197 (-) 1173 Protein_128 ATPase, T2SS/T4P/T4SS family -
  F506_RS00640 (F506_00640) - 147372..148670 (-) 1299 WP_053194816.1 HlyC/CorC family transporter -
  F506_RS00650 (F506_00650) ispB 148932..149921 (-) 990 WP_053194818.1 octaprenyl diphosphate synthase -
  F506_RS00655 (F506_00655) rplU 150192..150503 (+) 312 WP_007878066.1 50S ribosomal protein L21 -
  F506_RS00660 (F506_00660) rpmA 150539..150796 (+) 258 WP_007878065.1 50S ribosomal protein L27 -

Sequence

Protein


Download         Length: 400 a.a.        Molecular weight: 42999.48 Da        Isoelectric Point: 10.3749

>NTDB_id=145671 F506_RS00630 WP_053194814.1 144800..146002(-) (pilC) [Herbaspirillum hiltneri N3]
MTAARDELYAWEGRDREGRPVRGEMRAGGPALVGATLRRQGIQPTLIRKKSVQRDKRIGDKDIALFTRQLATMLKAGVPL
LQAFDIVARSQANPALARLVAGLRADVEGGSGLHQAFGRHPRQFDALYCNLVAAGEQAGLLDELLARLAHYKEKTLATRS
KVRAALVYPVAIVAFAVLVTSIIMIWVVPSFKEVFGSFGAALPLPTLIVIAISDFLTRYWWMMAATLGGAGAWLLRAWRR
SPALQAKADRWLLRLPVFGNVVRKAALARWSRTLATLFAAGVPLVEALQSVRGAAANAVYADATAAIGRDVGDGASLAGA
IERTGLFPQLVGQMVAIGEESGALDQMLAKVADFYEIEVDEAVASISTLMEPFIMLVLGVVIGGLVIAMYLPIFKLGSVI

Nucleotide


Download         Length: 1203 bp        

>NTDB_id=145671 F506_RS00630 WP_053194814.1 144800..146002(-) (pilC) [Herbaspirillum hiltneri N3]
ATGACGGCGGCGCGCGACGAACTCTACGCGTGGGAAGGCCGCGACCGCGAGGGCAGACCCGTGCGCGGCGAGATGCGCGC
GGGCGGCCCGGCGCTGGTCGGCGCCACGCTGCGGCGCCAGGGTATCCAGCCGACATTGATCCGCAAGAAAAGCGTGCAGC
GCGACAAGCGCATCGGCGACAAAGACATCGCGCTGTTCACGCGTCAGTTGGCGACCATGCTCAAGGCCGGGGTGCCGCTG
TTGCAGGCGTTCGACATCGTCGCGCGCAGCCAGGCCAATCCGGCGCTGGCGCGGCTGGTGGCCGGGCTGCGCGCCGACGT
GGAAGGCGGCAGCGGCCTGCATCAGGCGTTCGGACGCCATCCGCGTCAGTTCGATGCGTTGTACTGCAACCTGGTCGCGG
CCGGCGAGCAGGCAGGTCTGCTCGACGAATTGCTGGCGCGCCTGGCCCACTACAAGGAAAAGACCCTGGCCACGCGCAGC
AAGGTGCGCGCGGCGCTGGTCTATCCGGTCGCCATCGTGGCCTTCGCCGTGCTGGTGACGTCCATCATCATGATCTGGGT
GGTGCCGTCGTTCAAGGAAGTATTCGGCAGCTTCGGCGCCGCGTTGCCGCTGCCGACGCTGATTGTGATTGCGATCTCGG
ATTTCCTGACGAGGTATTGGTGGATGATGGCCGCCACGCTCGGCGGCGCCGGCGCATGGCTGCTACGGGCATGGCGCCGG
TCGCCGGCCTTGCAGGCGAAGGCCGACCGCTGGCTGCTGCGGCTGCCGGTGTTCGGCAACGTCGTGCGCAAGGCGGCGTT
GGCGCGCTGGAGTCGCACGCTGGCGACGCTGTTCGCCGCCGGCGTTCCGCTGGTCGAGGCGCTACAGTCAGTGCGCGGCG
CGGCTGCCAATGCAGTGTATGCCGACGCCACCGCCGCTATCGGCCGCGACGTCGGCGATGGCGCCAGCCTGGCGGGGGCG
ATCGAGCGTACCGGCCTGTTCCCCCAGCTGGTCGGACAGATGGTCGCCATCGGCGAGGAATCCGGCGCACTTGACCAGAT
GCTCGCCAAAGTCGCCGATTTTTACGAAATCGAGGTCGATGAAGCGGTTGCCTCCATCTCCACGCTGATGGAACCCTTTA
TCATGCTGGTATTGGGCGTCGTCATCGGCGGCCTGGTGATCGCGATGTACTTGCCTATTTTCAAACTGGGATCTGTTATC
TGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(270-392)

Type II secretion system (T2SS), protein F (T2SSF)

(66-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

50.623

100

0.507
  pilC Acinetobacter baylyi ADP1

48.995

99.5

0.488
  pilG Neisseria meningitidis 44/76-A

48.12

99.75

0.48
  pilG Neisseria gonorrhoeae MS11

48.12

99.75

0.48
  pilC Acinetobacter baumannii D1279779

48.111

99.25

0.478
  pilC Legionella pneumophila strain ERS1305867

47.222

99

0.467
  pilC Thermus thermophilus HB27

42.607

99.75

0.425
  pilC Vibrio cholerae strain A1552

40.201

99.5

0.4
  pilC Vibrio campbellii strain DS40M4

39.25

100

0.393

Multiple sequence alignment