Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   F506_RS00625 Genome accession   NZ_CP011409
Coordinates   143934..144800 (-) Length   288 a.a.
NCBI ID   WP_053194812.1    Uniprot ID   -
Organism   Herbaspirillum hiltneri N3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 138934..149800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F506_RS00590 (F506_00590) argJ 139349..140584 (+) 1236 WP_053194800.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  F506_RS00600 (F506_00600) - 140824..141699 (+) 876 WP_053194804.1 ATP-binding protein -
  F506_RS00605 (F506_00605) - 141699..142115 (+) 417 WP_053194806.1 NUDIX domain-containing protein -
  F506_RS00610 (F506_00610) yacG 142131..142319 (-) 189 WP_053194808.1 DNA gyrase inhibitor YacG -
  F506_RS00615 (F506_00615) zapD 142386..143141 (-) 756 WP_053194809.1 cell division protein ZapD -
  F506_RS00620 (F506_00620) coaE 143284..143934 (-) 651 WP_053194810.1 dephospho-CoA kinase -
  F506_RS00625 (F506_00625) pilD 143934..144800 (-) 867 WP_053194812.1 A24 family peptidase Machinery gene
  F506_RS00630 (F506_00630) pilC 144800..146002 (-) 1203 WP_053194814.1 type II secretion system F family protein Machinery gene
  F506_RS00635 (F506_00635) - 146025..147197 (-) 1173 Protein_128 ATPase, T2SS/T4P/T4SS family -
  F506_RS00640 (F506_00640) - 147372..148670 (-) 1299 WP_053194816.1 HlyC/CorC family transporter -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 30770.52 Da        Isoelectric Point: 8.1667

>NTDB_id=145670 F506_RS00625 WP_053194812.1 143934..144800(-) (pilD) [Herbaspirillum hiltneri N3]
MFELLTLADMHGSGNAAAAALAACAGLLIGSFLNVVIHRLPQMMQREAENYLAHEAGRSLPHGERYNLWTPRSACPHCAA
PIAPRHNIPLLGYLLLRGRCAACGTAISRRYPAVEIFTALLSALTAWHFGLGLEGVAALALVCFLIALGFIDARTQLLPD
SLTLPLLWLGLLVNLDGTFVPLADAVTGAAAGYLVLWSIYWVFRLATGKEGMGYGDFKLLAALGAWLGWQALPLILVLAS
CTGAVVGIGMVILRKHGKDQTIPFGPYLALGGVLMLLYGKSLFLFGLY

Nucleotide


Download         Length: 867 bp        

>NTDB_id=145670 F506_RS00625 WP_053194812.1 143934..144800(-) (pilD) [Herbaspirillum hiltneri N3]
ATGTTCGAACTGCTGACTCTGGCCGACATGCACGGCAGTGGCAATGCCGCAGCAGCGGCGCTGGCCGCCTGCGCGGGACT
GCTGATCGGCAGCTTCCTCAATGTCGTGATCCACCGGCTGCCGCAGATGATGCAACGCGAAGCGGAAAACTACCTGGCTC
ACGAAGCCGGGCGCAGCCTGCCGCACGGCGAACGCTACAACCTGTGGACACCGCGCTCGGCCTGCCCGCATTGCGCTGCG
CCGATCGCGCCCCGGCACAATATTCCGCTGCTCGGTTATCTGCTGCTGCGCGGGCGCTGCGCGGCGTGCGGTACGGCCAT
CTCGCGCCGCTATCCGGCAGTGGAGATTTTCACGGCGCTGCTGTCGGCGCTGACGGCCTGGCATTTCGGCCTCGGCCTGG
AAGGCGTCGCCGCGCTGGCCCTGGTCTGCTTCCTGATTGCGCTGGGGTTCATCGACGCCCGCACCCAGCTGCTGCCCGAC
AGCCTGACTCTGCCGCTGCTGTGGCTGGGCCTGCTGGTCAATCTCGACGGCACCTTCGTGCCGTTGGCCGATGCTGTGAC
AGGCGCGGCGGCCGGTTATCTTGTACTCTGGAGCATTTACTGGGTCTTCAGGCTGGCCACCGGCAAGGAAGGCATGGGTT
ACGGCGACTTCAAGCTGCTGGCAGCGCTCGGCGCCTGGCTGGGCTGGCAGGCGCTGCCGCTGATCCTGGTGCTGGCATCC
TGCACCGGCGCCGTAGTCGGCATCGGCATGGTGATTCTGCGCAAGCACGGCAAGGACCAGACCATTCCGTTCGGCCCCTA
CCTGGCGCTGGGCGGCGTACTGATGCTGCTGTACGGCAAATCCCTGTTTCTATTCGGATTGTATTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(140-248)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(25-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

54.682

92.708

0.507
  pilD Neisseria gonorrhoeae MS11

49.627

93.056

0.462
  pilD Vibrio campbellii strain DS40M4

49.064

92.708

0.455
  pilD Acinetobacter baumannii D1279779

45.247

91.319

0.413
  pilD Acinetobacter nosocomialis M2

45.247

91.319

0.413

Multiple sequence alignment