Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | FORC14_RS04965 | Genome accession | NZ_CP011406 |
| Coordinates | 1064963..1065247 (+) | Length | 94 a.a. |
| NCBI ID | WP_021449594.1 | Uniprot ID | - |
| Organism | Vibrio parahaemolyticus strain FORC_014 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1059963..1070247
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FORC14_RS04955 (FORC14_0940) | - | 1062481..1062753 (+) | 273 | WP_005382341.1 | HU family DNA-binding protein | - |
| FORC14_RS04960 (FORC14_0941) | ppiD | 1062953..1064812 (+) | 1860 | WP_063517261.1 | peptidylprolyl isomerase | - |
| FORC14_RS04965 (FORC14_0942) | comEA | 1064963..1065247 (+) | 285 | WP_021449594.1 | ComEA family DNA-binding protein | Machinery gene |
| FORC14_RS04970 (FORC14_0943) | rrtA | 1065338..1065889 (-) | 552 | WP_005495980.1 | rhombosortase | - |
| FORC14_RS04975 (FORC14_0944) | - | 1065893..1066507 (+) | 615 | WP_005456903.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| FORC14_RS04980 (FORC14_0945) | - | 1066517..1067851 (-) | 1335 | WP_063517262.1 | anti-phage deoxyguanosine triphosphatase | - |
| FORC14_RS04985 (FORC14_0946) | yfbR | 1067864..1068448 (-) | 585 | WP_005482513.1 | 5'-deoxynucleotidase | - |
| FORC14_RS04990 (FORC14_0947) | - | 1068539..1069753 (-) | 1215 | WP_005456922.1 | pyridoxal phosphate-dependent aminotransferase | - |
Sequence
Protein
Download Length: 94 a.a. Molecular weight: 10249.91 Da Isoelectric Point: 5.8425
>NTDB_id=145631 FORC14_RS04965 WP_021449594.1 1064963..1065247(+) (comEA) [Vibrio parahaemolyticus strain FORC_014]
MKWILTLCLVVFAPLSLAADTKADKYEGIEITVNINTASAEEIATMLKGIGEKKAQSIVDYRTEHGPFKTAADLTNVKGI
GEATIKKNEDRILL
MKWILTLCLVVFAPLSLAADTKADKYEGIEITVNINTASAEEIATMLKGIGEKKAQSIVDYRTEHGPFKTAADLTNVKGI
GEATIKKNEDRILL
Nucleotide
Download Length: 285 bp
>NTDB_id=145631 FORC14_RS04965 WP_021449594.1 1064963..1065247(+) (comEA) [Vibrio parahaemolyticus strain FORC_014]
ATGAAATGGATTTTAACCTTGTGTTTAGTGGTGTTCGCACCACTCAGTTTGGCCGCTGATACCAAGGCTGATAAATATGA
AGGAATTGAAATTACGGTCAATATCAATACTGCTTCTGCAGAAGAGATAGCAACGATGCTGAAAGGTATTGGCGAAAAGA
AAGCGCAAAGCATAGTTGACTACCGTACTGAGCACGGCCCATTTAAAACAGCAGCTGATTTAACCAATGTAAAAGGAATT
GGTGAAGCAACCATCAAGAAAAACGAAGACCGCATTCTTCTATAA
ATGAAATGGATTTTAACCTTGTGTTTAGTGGTGTTCGCACCACTCAGTTTGGCCGCTGATACCAAGGCTGATAAATATGA
AGGAATTGAAATTACGGTCAATATCAATACTGCTTCTGCAGAAGAGATAGCAACGATGCTGAAAGGTATTGGCGAAAAGA
AAGCGCAAAGCATAGTTGACTACCGTACTGAGCACGGCCCATTTAAAACAGCAGCTGATTTAACCAATGTAAAAGGAATT
GGTGAAGCAACCATCAAGAAAAACGAAGACCGCATTCTTCTATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
100 |
100 |
1 |
| comEA | Vibrio campbellii strain DS40M4 |
77.895 |
100 |
0.787 |
| comEA | Vibrio cholerae C6706 |
62.766 |
100 |
0.628 |
| comEA | Vibrio cholerae strain A1552 |
62.766 |
100 |
0.628 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
56.452 |
65.957 |
0.372 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
56.452 |
65.957 |
0.372 |
| comE | Neisseria gonorrhoeae MS11 |
38.889 |
95.745 |
0.372 |
| comE | Neisseria gonorrhoeae MS11 |
38.889 |
95.745 |
0.372 |
| comE | Neisseria gonorrhoeae MS11 |
38.889 |
95.745 |
0.372 |
| comE | Neisseria gonorrhoeae MS11 |
38.889 |
95.745 |
0.372 |
| comEA | Acinetobacter baylyi ADP1 |
47.222 |
76.596 |
0.362 |