Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AAW51_RS22965 Genome accession   NZ_CP011371
Coordinates   5433021..5434241 (+) Length   406 a.a.
NCBI ID   WP_047196466.1    Uniprot ID   A0A0G3BPH2
Organism   Caldimonas brevitalea strain DSM 7029     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5428021..5439241
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAW51_RS22935 (AAW51_4606) - 5428313..5428510 (-) 198 WP_047196461.1 LiaI-LiaF-like domain-containing protein -
  AAW51_RS22940 (AAW51_4607) rpmA 5428719..5428976 (-) 258 WP_047196462.1 50S ribosomal protein L27 -
  AAW51_RS22945 (AAW51_4608) rplU 5429008..5429319 (-) 312 WP_047196463.1 50S ribosomal protein L21 -
  AAW51_RS22950 (AAW51_4609) ispB 5429676..5430668 (+) 993 WP_256365019.1 octaprenyl diphosphate synthase -
  AAW51_RS22960 (AAW51_4610) pilB 5431265..5432983 (+) 1719 WP_047196465.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AAW51_RS22965 (AAW51_4611) pilC 5433021..5434241 (+) 1221 WP_047196466.1 type II secretion system F family protein Machinery gene
  AAW51_RS22970 (AAW51_4612) - 5434543..5435397 (+) 855 WP_047196467.1 prepilin peptidase -
  AAW51_RS22975 (AAW51_4613) coaE 5435428..5436048 (+) 621 WP_047196468.1 dephospho-CoA kinase -
  AAW51_RS22980 (AAW51_4614) zapD 5436215..5436967 (+) 753 WP_047196469.1 cell division protein ZapD -
  AAW51_RS22985 (AAW51_4615) - 5436967..5437188 (+) 222 WP_047196470.1 DNA gyrase inhibitor YacG -
  AAW51_RS22990 (AAW51_4616) - 5437206..5437637 (-) 432 WP_047196471.1 NUDIX domain-containing protein -
  AAW51_RS22995 (AAW51_4617) - 5437634..5438515 (-) 882 WP_047196472.1 ATP-binding protein -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44184.94 Da        Isoelectric Point: 9.8772

>NTDB_id=145187 AAW51_RS22965 WP_047196466.1 5433021..5434241(+) (pilC) [Caldimonas brevitalea strain DSM 7029]
MATAAAAKKVQDFVFEWEGKDRNGKPVRGEMRAGGEAMVSASLRRQGVLVTKVKKRRMGGGKAIKHKDLTVFTRQLATMM
RAGVPLLQAFDIVGRGSTNAKMARLVNDIRSDVETGTSLSSAFRKYPLYFDALYCNLVEAGEAGGILETLLDRLATYQEK
TLAIKAKIKSALIYPVAVLVVAFVVVAVIMIFVIPAFKEVFTSFGADLPGPTLLVMSISEFFVAYWWLIFGVTIGGTYFF
FQSWKRSERMQKTMDRLLLRVPMFGPLVNKSAVARWTRTLATMFSAGVPLVEALDSVGGASGNAVFAEATEKIQKDVSTG
SSLTMSMQSTGVFPTMVLQMCAIGEESGSIDHMLNKAAEFYENEVDEAVKGLSSLMEPVIIVVLGSIIGGIVVSMYLPIF
KLGQVV

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=145187 AAW51_RS22965 WP_047196466.1 5433021..5434241(+) (pilC) [Caldimonas brevitalea strain DSM 7029]
ATGGCAACGGCTGCTGCGGCGAAGAAGGTTCAAGATTTCGTTTTCGAGTGGGAAGGCAAAGACCGCAATGGCAAGCCGGT
GCGGGGCGAAATGCGCGCCGGCGGCGAGGCAATGGTCAGTGCCAGCTTGCGCCGCCAGGGCGTGCTGGTCACCAAGGTCA
AGAAGCGGCGCATGGGTGGCGGCAAGGCCATCAAGCATAAGGACTTGACCGTGTTCACCCGCCAGCTCGCGACGATGATG
CGCGCCGGCGTGCCCTTGCTCCAGGCCTTCGACATCGTCGGTCGCGGCAGCACGAATGCCAAGATGGCGCGCCTGGTCAA
CGACATCCGCAGCGACGTCGAAACCGGCACCAGCCTGTCGTCCGCTTTCCGCAAATACCCGCTCTACTTCGACGCGCTCT
ATTGCAACCTGGTCGAGGCCGGTGAAGCCGGCGGTATTCTGGAAACCCTGCTCGACCGGCTCGCCACCTATCAGGAAAAG
ACGCTGGCGATCAAGGCCAAGATCAAATCTGCGCTGATCTACCCGGTCGCGGTGCTGGTGGTCGCCTTCGTCGTCGTCGC
GGTGATCATGATTTTCGTGATCCCGGCCTTCAAGGAGGTCTTCACGTCTTTCGGCGCCGACCTGCCCGGGCCGACCTTGC
TCGTGATGTCGATTTCCGAGTTTTTCGTCGCGTACTGGTGGTTGATCTTCGGCGTCACGATTGGCGGCACCTATTTCTTC
TTCCAGTCGTGGAAACGCTCGGAGAGGATGCAAAAGACGATGGACCGCCTGCTGCTGCGCGTGCCGATGTTCGGACCGCT
GGTCAACAAGTCAGCCGTGGCGCGCTGGACCCGCACGCTGGCCACCATGTTCTCGGCCGGTGTGCCGCTGGTCGAGGCGC
TCGACTCCGTGGGCGGCGCGTCTGGCAACGCCGTGTTTGCCGAAGCGACCGAGAAGATTCAGAAAGACGTCTCGACCGGC
TCCAGCCTCACCATGTCGATGCAGAGCACCGGCGTGTTCCCGACCATGGTGCTGCAGATGTGCGCGATCGGCGAAGAATC
CGGTTCGATCGACCACATGCTCAACAAGGCGGCCGAGTTCTACGAGAACGAGGTCGACGAGGCCGTCAAGGGTCTGTCCA
GCCTGATGGAGCCCGTCATCATCGTGGTGCTGGGCAGCATCATCGGCGGCATCGTCGTCTCGATGTATTTGCCGATCTTC
AAGCTGGGTCAGGTGGTGTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0G3BPH2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.465

99.507

0.532
  pilG Neisseria gonorrhoeae MS11

51.75

98.522

0.51
  pilG Neisseria meningitidis 44/76-A

51.5

98.522

0.507
  pilC Acinetobacter baylyi ADP1

49.268

100

0.498
  pilC Legionella pneumophila strain ERS1305867

49.495

97.537

0.483
  pilC Acinetobacter baumannii D1279779

47.42

100

0.475
  pilC Vibrio campbellii strain DS40M4

41.147

98.768

0.406
  pilC Vibrio cholerae strain A1552

41.162

97.537

0.401
  pilC Thermus thermophilus HB27

39.098

98.276

0.384

Multiple sequence alignment