Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilA2   Type   Machinery gene
Locus tag   AXE82_RS03535 Genome accession   NZ_CP014234
Coordinates   815186..815689 (+) Length   167 a.a.
NCBI ID   WP_156627541.1    Uniprot ID   A0A378Q862
Organism   Moraxella osloensis strain CCUG 350     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 810186..820689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AXE82_RS03520 (AXE82_03520) pseB 810614..811612 (-) 999 WP_062331488.1 UDP-N-acetylglucosamine 4,6-dehydratase (inverting) -
  AXE82_RS03525 (AXE82_03525) - 811652..812917 (-) 1266 WP_062331490.1 exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase -
  AXE82_RS03530 (AXE82_03530) - 812917..814716 (-) 1800 WP_062331493.1 PglL family O-oligosaccharyltransferase -
  AXE82_RS03535 (AXE82_03535) pilA2 815186..815689 (+) 504 WP_156627541.1 pilin Machinery gene
  AXE82_RS03540 (AXE82_03540) - 815689..816966 (+) 1278 WP_062331497.1 O-antigen ligase family protein -
  AXE82_RS03545 (AXE82_03545) pilE 817292..817708 (-) 417 WP_062331500.1 type IV pilin protein Machinery gene
  AXE82_RS12385 (AXE82_03550) - 817708..818268 (-) 561 WP_269465434.1 type IV pilin protein -

Sequence


Protein


Download         Length: 167 a.a.        Molecular weight: 16668.13 Da        Isoelectric Point: 8.1079

>NTDB_id=144804 AXE82_RS03535 WP_156627541.1 815186..815689(+) (pilA2) [Moraxella osloensis strain CCUG 350]
MNAQKGFTLIELMIVVAIIGILAAIAIPAYQDYTIRAKISEGLTLSNGLKTAIAESFQSKGPSSMACTDATTCASIGASP
MDATALAGNKNVASITSDAAGVITIVYKPAVVPTGSNNLTLTPVGADGTTALNLSAAASAGSQVNWRCGGTGTTVAAKFL
PANCRGT

Nucleotide


Download         Length: 504 bp        

>NTDB_id=144804 AXE82_RS03535 WP_156627541.1 815186..815689(+) (pilA2) [Moraxella osloensis strain CCUG 350]
ATGAACGCTCAAAAAGGTTTTACCCTTATCGAATTAATGATCGTTGTCGCTATTATCGGTATTTTGGCTGCGATTGCGAT
TCCTGCTTATCAGGATTATACAATTCGAGCTAAGATTTCTGAAGGCTTGACTTTATCAAATGGTTTAAAAACGGCTATTG
CTGAAAGTTTCCAAAGTAAAGGGCCTTCTAGCATGGCATGTACTGATGCAACTACATGTGCATCAATAGGAGCATCTCCA
ATGGATGCGACAGCTTTAGCGGGTAATAAAAATGTTGCTTCTATCACAAGTGATGCGGCTGGTGTAATTACAATTGTATA
TAAGCCAGCGGTTGTTCCTACTGGTTCAAATAACTTAACACTTACGCCAGTTGGTGCAGATGGTACTACAGCATTAAATT
TAAGTGCTGCAGCAAGTGCGGGTTCTCAAGTAAATTGGCGGTGTGGTGGAACTGGTACAACAGTTGCTGCAAAATTTTTA
CCTGCAAACTGCCGTGGGACCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A378Q862

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA2 Legionella pneumophila str. Paris

47.561

98.204

0.467

  pilA2 Legionella pneumophila strain ERS1305867

46.951

98.204

0.461

  pilA Ralstonia pseudosolanacearum GMI1000

41.899

100

0.449

  pilE Neisseria elongata subsp. glycolytica ATCC 29315

37.895

100

0.431

  comP Acinetobacter baylyi ADP1

41.279

100

0.425

  pilE Neisseria gonorrhoeae strain FA1090

38.068

100

0.401

  pilA Pseudomonas aeruginosa PAK

37.278

100

0.377

  pilE Neisseria gonorrhoeae MS11

35.795

100

0.377

  pilA/pilA1 Eikenella corrodens VA1

36.905

100

0.371


Multiple sequence alignment