Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   TP45_RS17560 Genome accession   NZ_CP011250
Coordinates   3858443..3859702 (+) Length   419 a.a.
NCBI ID   WP_007962468.1    Uniprot ID   -
Organism   Xanthomonas citri pv. aurantifolii strain FDC 1561     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3853443..3864702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TP45_RS17535 (TP45_16730) pilR 3853477..3854931 (+) 1455 WP_173647341.1 sigma-54 dependent transcriptional regulator Regulator
  TP45_RS17545 (TP45_16735) pilB 3855380..3857116 (-) 1737 WP_007965359.1 type IV-A pilus assembly ATPase PilB Machinery gene
  TP45_RS17550 (TP45_16740) pilA2 3857158..3857571 (-) 414 WP_088411725.1 pilin Machinery gene
  TP45_RS17555 (TP45_16745) comP 3857669..3858097 (-) 429 WP_007962467.1 pilin Machinery gene
  TP45_RS17560 (TP45_16750) pilC 3858443..3859702 (+) 1260 WP_007962468.1 type II secretion system F family protein Machinery gene
  TP45_RS17565 (TP45_16755) - 3859709..3860572 (+) 864 WP_007962469.1 A24 family peptidase -
  TP45_RS17570 (TP45_16760) coaE 3860586..3861197 (+) 612 WP_007962470.1 dephospho-CoA kinase -
  TP45_RS17575 (TP45_16765) - 3861312..3862292 (-) 981 WP_007969100.1 IS5 family transposase -
  TP45_RS17590 (TP45_16780) - 3863750..3864148 (+) 399 WP_007962324.1 SymE family type I addiction module toxin -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45844.34 Da        Isoelectric Point: 10.3363

>NTDB_id=143847 TP45_RS17560 WP_007962468.1 3858443..3859702(+) (pilC) [Xanthomonas citri pv. aurantifolii strain FDC 1561]
MSVARNVIKKQPADRSNSQMQPFVWEGTDKRGIKMKGEQAARNVNMLRAELRRQGITPTVVKPKPKPLFGAAGKKVGPKD
IAFFSRQMATMMKSGVPIVGSLEIIGEGHKNPRMRKMVGQIRTDIEGGSSLHEAISKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVANYKENIEALKGKIKKALFYPAMVVAVALIVSAILLIFVVPQFEEVFKGLGAELPAFTQMIVAASRFMISYWWL
MLLVIGGAITGFIFAYKRSPRMQHGMDRLVLKVPVIGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYEE
AVLRMRDDVSVGYPVNMAMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPMIMVFIGTIV
GGMVIGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=143847 TP45_RS17560 WP_007962468.1 3858443..3859702(+) (pilC) [Xanthomonas citri pv. aurantifolii strain FDC 1561]
ATGTCAGTCGCGCGTAACGTAATCAAAAAACAGCCAGCCGACCGAAGCAACAGCCAGATGCAGCCTTTTGTATGGGAGGG
GACGGATAAGCGTGGCATCAAGATGAAAGGGGAGCAGGCGGCGCGCAATGTGAACATGTTGCGTGCAGAACTTCGTCGCC
AGGGCATTACGCCCACTGTCGTCAAGCCCAAGCCCAAGCCACTTTTCGGCGCTGCCGGCAAAAAAGTGGGCCCCAAGGAC
ATTGCGTTTTTCAGTCGTCAGATGGCAACCATGATGAAGTCCGGCGTTCCCATCGTAGGATCGCTTGAGATCATTGGCGA
GGGGCACAAGAATCCACGAATGAGGAAAATGGTCGGCCAGATAAGGACCGACATTGAAGGCGGCTCTTCACTGCATGAAG
CGATCAGCAAGCATCCAGTACAGTTTGACGAGCTCTACCGCAACCTTGTCCGCGCGGGAGAGGGCGCAGGCGTGCTGGAG
ACAGTCTTAGACACAGTCGCCAATTACAAAGAAAACATCGAGGCCTTGAAAGGCAAGATCAAGAAGGCGCTCTTCTACCC
CGCAATGGTCGTTGCAGTCGCCCTCATTGTTAGCGCCATCTTGCTCATTTTTGTTGTTCCACAGTTCGAAGAAGTCTTCA
AAGGGTTGGGAGCCGAACTTCCCGCGTTCACGCAGATGATCGTTGCGGCATCTCGCTTCATGATCAGCTACTGGTGGCTA
ATGCTGCTCGTCATCGGTGGCGCGATTACCGGCTTCATTTTTGCTTACAAGCGCTCACCTCGCATGCAACATGGCATGGA
TCGCCTGGTCTTGAAGGTGCCTGTCATCGGCCAAATTATGCATAACAGTTCCATCGCAAGGTTTGCGCGTACGACCGCCG
TGACCTTCAAGGCCGGCGTTCCGCTCGTGGAAGCACTCGGCATTGTTGCGGGGGCGACTGGTAACAAAGTTTATGAAGAA
GCAGTGCTGCGCATGCGTGACGACGTATCGGTGGGCTATCCAGTCAACATGGCCATGAAGCAGGTCAACCTGTTCCCACA
CATGGTTATTCAAATGACTGCGATTGGCGAAGAGGCCGGTGCGCTGGATGCCATGCTGTTCAAGGTAGCCGAGTACTTCG
AACAGGAAGTCAACAATGCCGTGGATGCGTTGAGCAGCTTGCTGGAACCAATGATCATGGTGTTCATCGGCACCATCGTC
GGCGGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.04

94.511

0.511
  pilC Acinetobacter baylyi ADP1

52.723

96.42

0.508
  pilC Legionella pneumophila strain ERS1305867

51.358

96.659

0.496
  pilC Acinetobacter baumannii D1279779

50.99

96.42

0.492
  pilG Neisseria gonorrhoeae MS11

44.638

95.704

0.427
  pilG Neisseria meningitidis 44/76-A

44.14

95.704

0.422
  pilC Vibrio cholerae strain A1552

41.25

95.465

0.394
  pilC Vibrio campbellii strain DS40M4

39.454

96.181

0.379
  pilC Thermus thermophilus HB27

38.155

95.704

0.365

Multiple sequence alignment