Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | LG3211_RS18440 | Genome accession | NZ_CP011131 |
| Coordinates | 4555593..4556855 (+) | Length | 420 a.a. |
| NCBI ID | WP_057944103.1 | Uniprot ID | - |
| Organism | Lysobacter gummosus strain 3.2.11 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4550593..4561855
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LG3211_RS18420 (LG3211_4058) | - | 4551288..4552082 (-) | 795 | WP_148649007.1 | hypothetical protein | - |
| LG3211_RS18425 (LG3211_4059) | - | 4552138..4552767 (-) | 630 | WP_057944101.1 | class I SAM-dependent methyltransferase | - |
| LG3211_RS18430 (LG3211_4060) | - | 4552830..4553723 (-) | 894 | WP_057944102.1 | glycosyltransferase family 2 protein | - |
| LG3211_RS18435 (LG3211_4061) | pilB | 4553858..4555588 (+) | 1731 | WP_083512649.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| LG3211_RS18440 (LG3211_4062) | pilC | 4555593..4556855 (+) | 1263 | WP_057944103.1 | type II secretion system F family protein | Machinery gene |
| LG3211_RS18445 (LG3211_4063) | - | 4556877..4557764 (+) | 888 | WP_057944104.1 | A24 family peptidase | - |
| LG3211_RS18450 (LG3211_4064) | coaE | 4557767..4558387 (+) | 621 | WP_057944105.1 | dephospho-CoA kinase | - |
| LG3211_RS18455 (LG3211_4065) | - | 4558626..4559591 (-) | 966 | WP_057945583.1 | Nudix family hydrolase | - |
Sequence
Protein
Download Length: 420 a.a. Molecular weight: 45597.92 Da Isoelectric Point: 10.3227
>NTDB_id=142639 LG3211_RS18440 WP_057944103.1 4555593..4556855(+) (pilC) [Lysobacter gummosus strain 3.2.11]
MSATRTATKQATQTAVRRANPLDMFVWQGTDKRGIKMKGEQAAKNANLLRAELRRQGITPTVVKPKGKPLFGASGSRITP
GEIAIFSRQIATMMKSGVPIVTSLEIIGEGHKNPRMKKLLNSVRADLESGSSLHEAMSKHPVQFDELYRNLVKAGESAGV
LETVLDTVANYKENIETLKGKIKKALFYPATVVAVAILVSAILLIFVVPQFQATFKSFGADLPAFTLMVIGMSDFMISWW
WAVLLVVIGAAVAFIMAKNRSPAFAHFLDRAMLKIPVVGQILHNAAIARFARTLAVTFRAGVPLVEALDTVAGATGNVVY
EKAVLRIRDDVSVGYQVNMAMKQVNLFPHMVIQMTAIGEEAGALDTMLVKVAEFYEQEVNNAVDALSSLLEPLIMIILGV
IVGGMVVAMYLPIFKLAATI
MSATRTATKQATQTAVRRANPLDMFVWQGTDKRGIKMKGEQAAKNANLLRAELRRQGITPTVVKPKGKPLFGASGSRITP
GEIAIFSRQIATMMKSGVPIVTSLEIIGEGHKNPRMKKLLNSVRADLESGSSLHEAMSKHPVQFDELYRNLVKAGESAGV
LETVLDTVANYKENIETLKGKIKKALFYPATVVAVAILVSAILLIFVVPQFQATFKSFGADLPAFTLMVIGMSDFMISWW
WAVLLVVIGAAVAFIMAKNRSPAFAHFLDRAMLKIPVVGQILHNAAIARFARTLAVTFRAGVPLVEALDTVAGATGNVVY
EKAVLRIRDDVSVGYQVNMAMKQVNLFPHMVIQMTAIGEEAGALDTMLVKVAEFYEQEVNNAVDALSSLLEPLIMIILGV
IVGGMVVAMYLPIFKLAATI
Nucleotide
Download Length: 1263 bp
>NTDB_id=142639 LG3211_RS18440 WP_057944103.1 4555593..4556855(+) (pilC) [Lysobacter gummosus strain 3.2.11]
ATGTCCGCGACCCGAACCGCCACCAAGCAAGCCACACAGACCGCAGTACGCCGGGCCAACCCGCTCGACATGTTCGTCTG
GCAGGGCACCGACAAGCGCGGCATCAAGATGAAGGGCGAGCAGGCGGCCAAGAACGCCAACCTGCTGCGCGCCGAACTGC
GCCGGCAAGGCATCACCCCGACCGTGGTCAAGCCCAAGGGCAAGCCGCTGTTCGGCGCCTCCGGCAGCCGCATCACCCCG
GGCGAAATCGCGATCTTCAGCCGCCAGATCGCCACCATGATGAAGTCGGGCGTGCCGATCGTGACCTCGCTGGAAATCAT
CGGCGAGGGCCACAAGAACCCGCGCATGAAGAAGCTGCTGAACTCGGTGCGCGCCGACCTGGAAAGCGGCTCGTCGCTGC
ACGAGGCCATGAGCAAGCATCCGGTCCAGTTCGATGAGCTTTACCGCAACCTGGTCAAGGCCGGCGAATCGGCGGGCGTG
CTCGAAACCGTGCTCGACACGGTCGCCAACTACAAAGAAAACATCGAAACCCTCAAGGGCAAGATCAAGAAGGCCTTGTT
CTACCCCGCCACCGTGGTCGCGGTGGCGATCCTGGTCAGCGCGATCCTGCTGATCTTCGTGGTGCCGCAGTTCCAGGCCA
CGTTCAAGAGCTTCGGCGCCGACTTGCCGGCCTTCACGCTCATGGTCATCGGCATGAGCGATTTCATGATTTCATGGTGG
TGGGCGGTATTGCTGGTGGTGATTGGCGCCGCCGTGGCCTTCATCATGGCCAAGAACCGCTCCCCCGCCTTCGCCCACTT
CCTCGACCGGGCCATGCTCAAGATCCCGGTCGTCGGCCAGATCCTGCACAACGCCGCGATCGCCCGCTTCGCCCGCACCC
TGGCGGTGACCTTCCGCGCCGGCGTGCCGCTGGTCGAGGCACTGGACACCGTGGCCGGCGCGACCGGCAACGTGGTCTAC
GAAAAGGCGGTCCTGCGCATCCGCGACGACGTCTCGGTCGGCTACCAGGTCAACATGGCGATGAAGCAGGTCAACCTGTT
CCCGCACATGGTGATCCAGATGACCGCGATCGGCGAAGAGGCCGGCGCACTCGACACCATGCTGGTCAAGGTCGCGGAGT
TCTACGAGCAGGAAGTCAACAACGCCGTGGATGCGCTGTCGAGCCTGCTGGAACCGCTGATCATGATCATCCTCGGCGTG
ATCGTCGGCGGCATGGTCGTCGCCATGTATCTGCCGATCTTCAAACTGGCTGCGACGATCTGA
ATGTCCGCGACCCGAACCGCCACCAAGCAAGCCACACAGACCGCAGTACGCCGGGCCAACCCGCTCGACATGTTCGTCTG
GCAGGGCACCGACAAGCGCGGCATCAAGATGAAGGGCGAGCAGGCGGCCAAGAACGCCAACCTGCTGCGCGCCGAACTGC
GCCGGCAAGGCATCACCCCGACCGTGGTCAAGCCCAAGGGCAAGCCGCTGTTCGGCGCCTCCGGCAGCCGCATCACCCCG
GGCGAAATCGCGATCTTCAGCCGCCAGATCGCCACCATGATGAAGTCGGGCGTGCCGATCGTGACCTCGCTGGAAATCAT
CGGCGAGGGCCACAAGAACCCGCGCATGAAGAAGCTGCTGAACTCGGTGCGCGCCGACCTGGAAAGCGGCTCGTCGCTGC
ACGAGGCCATGAGCAAGCATCCGGTCCAGTTCGATGAGCTTTACCGCAACCTGGTCAAGGCCGGCGAATCGGCGGGCGTG
CTCGAAACCGTGCTCGACACGGTCGCCAACTACAAAGAAAACATCGAAACCCTCAAGGGCAAGATCAAGAAGGCCTTGTT
CTACCCCGCCACCGTGGTCGCGGTGGCGATCCTGGTCAGCGCGATCCTGCTGATCTTCGTGGTGCCGCAGTTCCAGGCCA
CGTTCAAGAGCTTCGGCGCCGACTTGCCGGCCTTCACGCTCATGGTCATCGGCATGAGCGATTTCATGATTTCATGGTGG
TGGGCGGTATTGCTGGTGGTGATTGGCGCCGCCGTGGCCTTCATCATGGCCAAGAACCGCTCCCCCGCCTTCGCCCACTT
CCTCGACCGGGCCATGCTCAAGATCCCGGTCGTCGGCCAGATCCTGCACAACGCCGCGATCGCCCGCTTCGCCCGCACCC
TGGCGGTGACCTTCCGCGCCGGCGTGCCGCTGGTCGAGGCACTGGACACCGTGGCCGGCGCGACCGGCAACGTGGTCTAC
GAAAAGGCGGTCCTGCGCATCCGCGACGACGTCTCGGTCGGCTACCAGGTCAACATGGCGATGAAGCAGGTCAACCTGTT
CCCGCACATGGTGATCCAGATGACCGCGATCGGCGAAGAGGCCGGCGCACTCGACACCATGCTGGTCAAGGTCGCGGAGT
TCTACGAGCAGGAAGTCAACAACGCCGTGGATGCGCTGTCGAGCCTGCTGGAACCGCTGATCATGATCATCCTCGGCGTG
ATCGTCGGCGGCATGGTCGTCGCCATGTATCTGCCGATCTTCAAACTGGCTGCGACGATCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Legionella pneumophila strain ERS1305867 |
55.446 |
96.19 |
0.533 |
| pilC | Pseudomonas stutzeri DSM 10701 |
55.808 |
94.286 |
0.526 |
| pilC | Acinetobacter baylyi ADP1 |
51.961 |
97.143 |
0.505 |
| pilC | Acinetobacter baumannii D1279779 |
51.597 |
96.905 |
0.5 |
| pilG | Neisseria gonorrhoeae MS11 |
43.5 |
95.238 |
0.414 |
| pilG | Neisseria meningitidis 44/76-A |
43.5 |
95.238 |
0.414 |
| pilC | Vibrio campbellii strain DS40M4 |
41.045 |
95.714 |
0.393 |
| pilC | Vibrio cholerae strain A1552 |
39.659 |
97.857 |
0.388 |
| pilC | Thermus thermophilus HB27 |
36.493 |
100 |
0.367 |