Detailed information NTG0142592

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: LA76x_RS05500
• Genome accession: NZ_CP011129
• Coordinates: 1366651..1367844 (-)
• Length: 397 a.a.
• NCBI ID: WP_237051791.1
• Uniprot ID: -
• Organism: Lysobacter antibioticus strain 76
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1361651..1372844

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LA76x_RS05485 (LA76x_1184)	-	1363991..1365064 (+)	1074	WP_082647703.1	Nudix family hydrolase	-
LA76x_RS05490 (LA76x_1185)	coaE	1365115..1365738 (-)	624	WP_057916946.1	dephospho-CoA kinase	-
LA76x_RS05495 (LA76x_1186)	-	1365742..1366629 (-)	888	WP_057916947.1	A24 family peptidase	-
LA76x_RS05500 (LA76x_1187)	pilC	1366651..1367844 (-)	1194	WP_237051791.1	type II secretion system F family protein	Machinery gene
LA76x_RS05505 (LA76x_1188)	pilB	1367923..1369650 (-)	1728	WP_057916949.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LA76x_RS05510 (LA76x_1189)	-	1369786..1370646 (+)	861	WP_057916950.1	glycosyltransferase family 2 protein	-
LA76x_RS24000	-	1370643..1371347 (+)	705	WP_082647704.1	class I SAM-dependent methyltransferase	-
LA76x_RS05520	-	1371344..1372495 (+)	1152	WP_057916952.1	glycosyltransferase	-

Sequence

Protein

• Length: 397 a.a.
• Molecular weight: 43184.14 Da
• Isoelectric Point: 10.0115

>NTDB_id=142592 LA76x_RS05500 WP_237051791.1 1366651..1367844(-) (pilC) [Lysobacter antibioticus strain 76]
MFVWQGTDKRGIVMKGEQPAKNANLLRAELRRQGITPTVVKLKGKPLFGASGKRITPGEIAIFSRQIATMMKSGVPIVTS
LEIIGEGHKNPRMKTLLNAVRADIESGSSLHESLSKHPVQFDELYRNLVKAGESAGVLETVLDTIASYKENIETLKGKIK
KALFYPATVVAVAILVSAILLIFVVPQFQATFKSFGADLPAFTLMVIGASDFMIQWWWAILLLTIGAGVAFIMAKNRSPA
FAHFLDRVMLKIPVIGQILHNAAIARFARTLAVTFRAGVPLVEALDTVAGATGNVVYEKAVYRIRDDVSVGYQVNMAMKQ
VNLFPHMVVQMTAIGEEAGALDTMLVKVAEFYEQEVNNAVDALSSLLEPLIMIILGVVVGGMVVAMYLPIFKLAATI

Nucleotide

• Length: 1194 bp

>NTDB_id=142592 LA76x_RS05500 WP_237051791.1 1366651..1367844(-) (pilC) [Lysobacter antibioticus strain 76]
ATGTTCGTCTGGCAGGGCACCGACAAGCGCGGCATCGTCATGAAGGGCGAGCAGCCGGCGAAGAACGCCAACCTGCTGCG
CGCCGAACTGCGCCGCCAGGGCATCACCCCAACGGTCGTCAAGCTGAAGGGCAAACCCCTGTTCGGGGCGAGCGGCAAAC
GCATTACACCGGGCGAGATCGCGATCTTCAGCCGCCAGATCGCCACCATGATGAAGTCGGGCGTGCCGATCGTGACCTCG
CTCGAGATCATCGGCGAAGGTCACAAGAACCCGCGCATGAAGACCTTGCTTAATGCCGTGCGCGCTGACATCGAAAGCGG
TTCGTCGCTGCACGAGTCGCTGTCCAAGCACCCGGTCCAGTTCGACGAGCTGTACCGCAACCTGGTCAAGGCCGGCGAAT
CCGCCGGTGTGCTCGAGACCGTGCTGGATACGATCGCGAGTTACAAGGAAAACATCGAAACCCTCAAGGGCAAGATCAAG
AAGGCCCTGTTCTATCCGGCCACCGTCGTGGCCGTCGCGATCCTGGTCAGCGCGATCCTGCTGATCTTCGTCGTGCCGCA
GTTCCAGGCCACCTTCAAGAGCTTCGGCGCCGACCTGCCGGCGTTCACTTTGATGGTCATCGGTGCCAGCGATTTCATGA
TCCAGTGGTGGTGGGCGATCCTGCTGCTCACGATCGGCGCCGGCGTGGCCTTCATCATGGCCAAGAACCGTTCGCCGGCG
TTCGCCCATTTCCTCGACCGGGTCATGCTCAAGATCCCGGTGATCGGGCAGATCCTGCACAACGCCGCGATCGCCCGCTT
CGCCCGCACCCTCGCCGTCACCTTCCGCGCCGGCGTGCCTCTGGTCGAGGCCCTCGACACGGTCGCGGGCGCGACCGGCA
ACGTGGTCTACGAGAAGGCCGTGTACCGGATCCGCGACGACGTCTCGGTCGGCTACCAAGTCAACATGGCGATGAAGCAG
GTCAACCTGTTCCCGCACATGGTGGTGCAGATGACCGCCATCGGCGAAGAGGCCGGCGCCCTCGACACCATGTTGGTGAA
GGTCGCTGAGTTCTACGAGCAGGAGGTCAACAACGCCGTCGACGCGCTGTCGAGCCTGTTGGAACCGTTGATCATGATCA
TCCTGGGCGTCGTCGTCGGCGGCATGGTGGTCGCGATGTACCTGCCGATCTTCAAACTTGCTGCGACGATCTGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (63-186)

• Type II secretion system (T2SS), protein F (T2SSF) (267-389)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Legionella pneumophila strain ERS1305867	56.818	99.748	0.567
pilC	Pseudomonas stutzeri DSM 10701	55.303	99.748	0.552
pilC	Acinetobacter baylyi ADP1	52.261	100	0.524
pilC	Acinetobacter baumannii D1279779	51.637	100	0.516
pilG	Neisseria gonorrhoeae MS11	42.394	100	0.428
pilG	Neisseria meningitidis 44/76-A	42.394	100	0.428
pilC	Vibrio campbellii strain DS40M4	40.657	99.748	0.406
pilC	Vibrio cholerae strain A1552	40	100	0.403
pilC	Thermus thermophilus HB27	36.493	100	0.388