Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | PNIG_RS02155 | Genome accession | NZ_CP011036 |
| Coordinates | 465749..466966 (-) | Length | 405 a.a. |
| NCBI ID | WP_089367694.1 | Uniprot ID | A0AAC9XVX7 |
| Organism | Pseudoalteromonas nigrifaciens strain KMM 661 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 460749..471966
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PNIG_RS02135 (PNIG_a0468) | pilB | 460899..462572 (-) | 1674 | WP_089367690.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| PNIG_RS02140 (PNIG_a0469) | coaE | 462693..463325 (-) | 633 | WP_089367691.1 | dephospho-CoA kinase | - |
| PNIG_RS02145 (PNIG_a0470) | pilD | 463327..464247 (-) | 921 | WP_089367692.1 | A24 family peptidase | Machinery gene |
| PNIG_RS02150 (PNIG_a0471) | - | 464705..465088 (-) | 384 | WP_089367693.1 | GxxExxY protein | - |
| PNIG_RS02155 (PNIG_a0472) | pilC | 465749..466966 (-) | 1218 | WP_089367694.1 | type II secretion system F family protein | Machinery gene |
| PNIG_RS20250 (PNIG_a0473) | - | 466977..467417 (-) | 441 | WP_089367695.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| PNIG_RS20255 (PNIG_a0475) | - | 467438..467863 (-) | 426 | WP_307724743.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| PNIG_RS02170 (PNIG_a0476) | nadC | 468328..469173 (-) | 846 | WP_089367696.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
Sequence
Protein
Download Length: 405 a.a. Molecular weight: 44213.28 Da Isoelectric Point: 9.5998
>NTDB_id=141655 PNIG_RS02155 WP_089367694.1 465749..466966(-) (pilC) [Pseudoalteromonas nigrifaciens strain KMM 661]
MKKNSDLDTFQWIGVSTRGKRLEGEMTGASIALVKAQLRKQGITPSKVKRKAKPLFGVRMQAITPKDIALVTRQIATMLM
AGVPLIQSIEMIGSGSSNKSVSKLMETIADEVKAGQPLSQALRRHPRYFDDLYCDLVASGEQSGALDKIFDRVAIYKEKS
EALKSKIKKAMFYPIAVLVIALIVTSILLIFVVPQFQDIFSGFGAELPAFTLMVIGISEFMQEYWWMMLIVIVAFGWAFK
EAHLKSLKLRDATDRAILKLPVIGMILNKAAVARYARTLSTTFAAGVPLVDALDSAAGASGNAVYRYAILEIKAEVSSGN
QMNWAMRNSKIFPDMVIQMVAIGEESGSLDSMLGKVATIYEQEVDDAVDGLSSLLEPMIMAVLGVLVGGLIIAMYLPIFQ
LGSVI
MKKNSDLDTFQWIGVSTRGKRLEGEMTGASIALVKAQLRKQGITPSKVKRKAKPLFGVRMQAITPKDIALVTRQIATMLM
AGVPLIQSIEMIGSGSSNKSVSKLMETIADEVKAGQPLSQALRRHPRYFDDLYCDLVASGEQSGALDKIFDRVAIYKEKS
EALKSKIKKAMFYPIAVLVIALIVTSILLIFVVPQFQDIFSGFGAELPAFTLMVIGISEFMQEYWWMMLIVIVAFGWAFK
EAHLKSLKLRDATDRAILKLPVIGMILNKAAVARYARTLSTTFAAGVPLVDALDSAAGASGNAVYRYAILEIKAEVSSGN
QMNWAMRNSKIFPDMVIQMVAIGEESGSLDSMLGKVATIYEQEVDDAVDGLSSLLEPMIMAVLGVLVGGLIIAMYLPIFQ
LGSVI
Nucleotide
Download Length: 1218 bp
>NTDB_id=141655 PNIG_RS02155 WP_089367694.1 465749..466966(-) (pilC) [Pseudoalteromonas nigrifaciens strain KMM 661]
ATGAAAAAGAATAGTGATTTAGATACCTTTCAATGGATCGGTGTTAGTACTCGCGGGAAACGCCTTGAAGGTGAAATGAC
TGGCGCAAGTATTGCTTTAGTTAAAGCGCAACTTCGTAAACAAGGTATCACCCCCTCAAAAGTAAAGCGTAAAGCCAAGC
CTTTGTTCGGCGTGCGTATGCAGGCTATTACCCCGAAAGATATTGCCTTAGTTACTCGACAAATCGCTACTATGCTAATG
GCGGGTGTACCGCTAATTCAATCGATTGAGATGATAGGCTCAGGCTCTTCCAATAAAAGTGTAAGTAAACTGATGGAAAC
CATTGCTGATGAAGTAAAAGCTGGCCAGCCATTATCGCAAGCACTAAGACGCCATCCTCGTTATTTTGATGATTTATATT
GCGATTTAGTAGCATCGGGCGAGCAGTCTGGCGCTTTGGATAAAATATTCGACCGCGTGGCCATTTATAAAGAGAAGTCT
GAAGCGCTTAAATCAAAAATAAAAAAAGCGATGTTTTACCCAATTGCAGTATTAGTTATCGCACTTATAGTTACCTCAAT
ACTACTAATATTTGTAGTGCCGCAGTTTCAGGATATTTTTTCCGGATTTGGTGCTGAACTCCCTGCTTTTACCTTAATGG
TTATTGGTATATCGGAATTTATGCAGGAATATTGGTGGATGATGCTAATAGTTATTGTTGCATTCGGTTGGGCCTTTAAA
GAGGCGCACCTTAAAAGCTTAAAGCTCCGCGATGCTACCGACCGAGCTATATTAAAGCTCCCCGTTATTGGTATGATTTT
AAATAAAGCGGCTGTTGCCCGTTATGCTCGTACGCTTTCGACCACCTTTGCCGCTGGTGTACCGCTAGTTGATGCGCTGG
ATTCTGCTGCAGGTGCCTCAGGTAATGCGGTTTACCGTTATGCTATTTTAGAAATAAAAGCAGAGGTAAGCTCGGGGAAC
CAAATGAACTGGGCAATGCGTAACTCTAAAATATTCCCTGATATGGTAATACAAATGGTGGCTATTGGTGAAGAGTCGGG
ATCACTTGATAGCATGCTAGGTAAAGTAGCGACTATTTATGAGCAAGAAGTTGATGATGCAGTAGATGGGCTCTCAAGCC
TCTTAGAGCCAATGATTATGGCCGTATTAGGCGTGCTAGTAGGTGGTTTAATTATTGCCATGTACTTACCTATATTCCAA
CTTGGCTCTGTTATTTAG
ATGAAAAAGAATAGTGATTTAGATACCTTTCAATGGATCGGTGTTAGTACTCGCGGGAAACGCCTTGAAGGTGAAATGAC
TGGCGCAAGTATTGCTTTAGTTAAAGCGCAACTTCGTAAACAAGGTATCACCCCCTCAAAAGTAAAGCGTAAAGCCAAGC
CTTTGTTCGGCGTGCGTATGCAGGCTATTACCCCGAAAGATATTGCCTTAGTTACTCGACAAATCGCTACTATGCTAATG
GCGGGTGTACCGCTAATTCAATCGATTGAGATGATAGGCTCAGGCTCTTCCAATAAAAGTGTAAGTAAACTGATGGAAAC
CATTGCTGATGAAGTAAAAGCTGGCCAGCCATTATCGCAAGCACTAAGACGCCATCCTCGTTATTTTGATGATTTATATT
GCGATTTAGTAGCATCGGGCGAGCAGTCTGGCGCTTTGGATAAAATATTCGACCGCGTGGCCATTTATAAAGAGAAGTCT
GAAGCGCTTAAATCAAAAATAAAAAAAGCGATGTTTTACCCAATTGCAGTATTAGTTATCGCACTTATAGTTACCTCAAT
ACTACTAATATTTGTAGTGCCGCAGTTTCAGGATATTTTTTCCGGATTTGGTGCTGAACTCCCTGCTTTTACCTTAATGG
TTATTGGTATATCGGAATTTATGCAGGAATATTGGTGGATGATGCTAATAGTTATTGTTGCATTCGGTTGGGCCTTTAAA
GAGGCGCACCTTAAAAGCTTAAAGCTCCGCGATGCTACCGACCGAGCTATATTAAAGCTCCCCGTTATTGGTATGATTTT
AAATAAAGCGGCTGTTGCCCGTTATGCTCGTACGCTTTCGACCACCTTTGCCGCTGGTGTACCGCTAGTTGATGCGCTGG
ATTCTGCTGCAGGTGCCTCAGGTAATGCGGTTTACCGTTATGCTATTTTAGAAATAAAAGCAGAGGTAAGCTCGGGGAAC
CAAATGAACTGGGCAATGCGTAACTCTAAAATATTCCCTGATATGGTAATACAAATGGTGGCTATTGGTGAAGAGTCGGG
ATCACTTGATAGCATGCTAGGTAAAGTAGCGACTATTTATGAGCAAGAAGTTGATGATGCAGTAGATGGGCTCTCAAGCC
TCTTAGAGCCAATGATTATGGCCGTATTAGGCGTGCTAGTAGGTGGTTTAATTATTGCCATGTACTTACCTATATTCCAA
CTTGGCTCTGTTATTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
62.779 |
99.506 |
0.625 |
| pilC | Acinetobacter baumannii D1279779 |
55.172 |
100 |
0.553 |
| pilC | Legionella pneumophila strain ERS1305867 |
54.68 |
100 |
0.548 |
| pilC | Acinetobacter baylyi ADP1 |
54.074 |
100 |
0.541 |
| pilC | Vibrio cholerae strain A1552 |
44.361 |
98.519 |
0.437 |
| pilC | Vibrio campbellii strain DS40M4 |
42 |
98.765 |
0.415 |
| pilG | Neisseria meningitidis 44/76-A |
42.748 |
97.037 |
0.415 |
| pilG | Neisseria gonorrhoeae MS11 |
42.494 |
97.037 |
0.412 |