Detailed information NTG0141654

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PNIG_RS02145
• Genome accession: NZ_CP011036
• Coordinates: 463327..464247 (-)
• Length: 306 a.a.
• NCBI ID: WP_089367692.1
• Uniprot ID: A0AAC9UFL0
• Organism: Pseudoalteromonas nigrifaciens strain KMM 661
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 458327..469247

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PNIG_RS02125 (PNIG_a0465)	-	458969..459454 (+)	486	WP_086996570.1	Spy/CpxP family protein refolding chaperone	-
PNIG_RS02130 (PNIG_a0467)	yacG	459996..460226 (-)	231	WP_011327088.1	DNA gyrase inhibitor YacG	-
PNIG_RS02135 (PNIG_a0468)	pilB	460899..462572 (-)	1674	WP_089367690.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PNIG_RS02140 (PNIG_a0469)	coaE	462693..463325 (-)	633	WP_089367691.1	dephospho-CoA kinase	-
PNIG_RS02145 (PNIG_a0470)	pilD	463327..464247 (-)	921	WP_089367692.1	A24 family peptidase	Machinery gene
PNIG_RS02150 (PNIG_a0471)	-	464705..465088 (-)	384	WP_089367693.1	GxxExxY protein	-
PNIG_RS02155 (PNIG_a0472)	pilC	465749..466966 (-)	1218	WP_089367694.1	type II secretion system F family protein	Machinery gene
PNIG_RS20250 (PNIG_a0473)	-	466977..467417 (-)	441	WP_089367695.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
PNIG_RS20255 (PNIG_a0475)	-	467438..467863 (-)	426	WP_307724743.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
PNIG_RS02170 (PNIG_a0476)	nadC	468328..469173 (-)	846	WP_089367696.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 306 a.a.
• Molecular weight: 33671.98 Da
• Isoelectric Point: 7.4655

>NTDB_id=141654 PNIG_RS02145 WP_089367692.1 463327..464247(-) (pilD) [Pseudoalteromonas nigrifaciens strain KMM 661]
MQSFFLDITTVMQSQLWFYLTTIGLVSLCVGSFLNVVIYRLPLMIQREWQGECRLLLESELKSNKANTNEPFSSGLNSTF
NLVKPNSTCPKCKTAIKAWQNIPIISWLFLKGQCASCSNPISARYPIVEAITALLSLVVAYKLGATEQALLYIAITWALV
ALTFIDIDHMLLPDQITLPLVWLALIAAVLGYTVNPTDAIIGAACGYLSLWSVFWLFKLLTGKEGMGYGDFKLLAVFGAL
LGWQSLLIIILLSSVVGAIIGIALLTIQGKDKATPIPFGPYLAIAGWITMLWGEQLQASYFNLIGY

Nucleotide

• Length: 921 bp

>NTDB_id=141654 PNIG_RS02145 WP_089367692.1 463327..464247(-) (pilD) [Pseudoalteromonas nigrifaciens strain KMM 661]
ATGCAAAGTTTCTTTCTAGATATAACCACAGTAATGCAAAGCCAATTGTGGTTTTATTTAACCACTATTGGCTTGGTGAG
TTTGTGTGTTGGCAGTTTTTTAAACGTAGTTATTTACCGTTTGCCACTAATGATACAACGCGAATGGCAAGGCGAATGCC
GTTTGCTGCTAGAAAGCGAGCTGAAAAGTAATAAAGCAAACACTAACGAGCCTTTTAGTTCAGGTTTAAACTCAACTTTT
AATTTAGTAAAGCCCAACTCTACCTGCCCTAAATGTAAAACTGCAATTAAAGCATGGCAAAATATACCTATTATTAGCTG
GTTATTTTTAAAAGGTCAATGCGCCAGTTGTAGTAACCCGATATCGGCTCGCTATCCTATTGTAGAGGCAATAACTGCAC
TATTAAGCTTAGTAGTTGCGTATAAGCTAGGCGCTACCGAGCAAGCTTTACTTTATATAGCAATTACTTGGGCTTTAGTT
GCGCTTACCTTTATTGATATTGACCATATGCTACTGCCCGACCAAATTACCCTACCGCTTGTATGGCTGGCGCTTATTGC
AGCAGTACTTGGCTACACCGTCAACCCAACTGATGCCATTATTGGGGCGGCTTGCGGCTATTTGAGTTTGTGGAGCGTAT
TTTGGTTATTTAAATTACTTACCGGTAAAGAAGGCATGGGCTATGGCGACTTTAAATTACTTGCCGTGTTTGGTGCTTTG
CTTGGCTGGCAATCGTTATTGATTATTATTTTGCTCTCGAGCGTAGTGGGTGCCATTATTGGTATTGCGCTATTAACGAT
TCAAGGAAAAGACAAAGCCACGCCTATTCCGTTTGGCCCCTACCTAGCTATTGCAGGCTGGATCACCATGTTATGGGGCG
AGCAATTGCAAGCTAGCTACTTTAATTTAATTGGTTACTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (26-142)

• Type IV leader peptidase family (Peptidase_A24) (155-262)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.595	94.444	0.497
pilD	Vibrio campbellii strain DS40M4	50.169	96.405	0.484
pilD	Acinetobacter baumannii D1279779	50.896	91.176	0.464
pilD	Acinetobacter nosocomialis M2	50.178	91.83	0.461
pilD	Neisseria gonorrhoeae MS11	45.018	88.562	0.399