Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   TQ33_RS08485 Genome accession   NZ_CP010975
Coordinates   1884440..1885687 (-) Length   415 a.a.
NCBI ID   WP_046561674.1    Uniprot ID   A0A0F6RD55
Organism   Kangiella geojedonensis strain YCS-5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1879440..1890687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TQ33_RS08455 (TQ33_1678) ampE 1879605..1880480 (-) 876 WP_046561668.1 regulatory signaling modulator protein AmpE -
  TQ33_RS08460 (TQ33_1679) ampD 1880576..1881142 (-) 567 WP_046561669.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  TQ33_RS08465 (TQ33_1680) nadC 1881233..1882102 (+) 870 WP_046561670.1 carboxylating nicotinate-nucleotide diphosphorylase -
  TQ33_RS08470 (TQ33_1681) zapD 1882103..1882870 (-) 768 WP_046561671.1 cell division protein ZapD -
  TQ33_RS08475 (TQ33_1682) coaE 1882875..1883495 (-) 621 WP_046561672.1 dephospho-CoA kinase -
  TQ33_RS08480 (TQ33_1683) - 1883501..1884409 (-) 909 WP_046561673.1 A24 family peptidase -
  TQ33_RS08485 (TQ33_1684) pilC 1884440..1885687 (-) 1248 WP_046561674.1 type II secretion system F family protein Machinery gene
  TQ33_RS08490 (TQ33_1685) pilB 1885779..1887491 (-) 1713 WP_046561675.1 type IV-A pilus assembly ATPase PilB Machinery gene
  TQ33_RS08495 (TQ33_1686) - 1887560..1889269 (-) 1710 WP_046561676.1 PglL family O-oligosaccharyltransferase -
  TQ33_RS08500 (TQ33_1687) - 1889325..1889756 (-) 432 WP_046561677.1 pilin -
  TQ33_RS08505 yacG 1890282..1890479 (+) 198 WP_052735260.1 DNA gyrase inhibitor YacG -

Sequence

Protein


Download         Length: 415 a.a.        Molecular weight: 44565.38 Da        Isoelectric Point: 9.8118

>NTDB_id=141006 TQ33_RS08485 WP_046561674.1 1884440..1885687(-) (pilC) [Kangiella geojedonensis strain YCS-5]
MATAVKKRNTSKKQKKQKVFQWKGVNKQGQKVKGSMPAVDADEVKVALRKQGVTPKTVNADLFGSLGGGKKPIKPVDIAV
FLRQLATMMKAGVPLVQSFDIIGKGHENASVQDLVLKIKEDVESGNPFATALRGHPKYFDELVCDLIHAGEQSGTLEQML
DRIATYKEKSEALKSKIKKAMMYPIAVIVVSLAVTAVLLIYVVPMFKDLFSGAGADLPALTGMVVAASENMQANWYIYLG
VLIAIVFGFAQANKNSPQFREAKDRLLLKIPIFGPLVQKAAVARYARTLATTFAAGVPLVDALDSAAGASGNTVYKKAIM
KIKEDVTSGLQINMAMTSTGVFPNMVNQMVAIGEEAGSVDTMLSKVADIYEAEVDDAVDGLSSLIEPFVIVFIGGLVGTI
IVAMYLPIFKLGDAF

Nucleotide


Download         Length: 1248 bp        

>NTDB_id=141006 TQ33_RS08485 WP_046561674.1 1884440..1885687(-) (pilC) [Kangiella geojedonensis strain YCS-5]
ATGGCAACTGCAGTTAAAAAGCGCAATACATCTAAAAAGCAAAAAAAACAAAAAGTTTTTCAGTGGAAAGGGGTCAATAA
GCAGGGGCAAAAGGTTAAAGGCTCAATGCCTGCTGTTGATGCAGATGAAGTTAAGGTGGCTTTAAGAAAGCAGGGCGTAA
CTCCTAAAACTGTTAATGCTGATTTATTTGGTTCATTGGGTGGTGGAAAAAAACCGATAAAGCCGGTTGATATTGCTGTC
TTTCTACGCCAGCTAGCCACAATGATGAAGGCCGGTGTACCCTTAGTCCAGTCATTCGATATCATCGGAAAAGGCCATGA
GAATGCTAGTGTTCAAGACTTAGTCCTTAAAATTAAGGAAGATGTAGAGTCGGGTAACCCATTCGCCACAGCTTTGCGAG
GACATCCAAAATATTTTGATGAGCTTGTCTGTGATTTGATTCATGCTGGTGAGCAGTCAGGTACACTTGAGCAAATGCTT
GACCGTATTGCTACCTATAAAGAAAAGTCGGAAGCTTTAAAGTCGAAGATTAAAAAAGCTATGATGTATCCCATTGCAGT
TATCGTAGTATCGCTCGCAGTTACGGCAGTCCTACTGATTTATGTGGTACCAATGTTTAAAGACCTTTTTTCGGGAGCTG
GAGCTGATTTACCGGCTTTAACAGGCATGGTTGTGGCAGCATCAGAAAATATGCAGGCTAATTGGTACATTTATTTAGGG
GTGCTGATTGCTATTGTGTTTGGATTTGCTCAAGCGAATAAGAACTCTCCACAGTTTAGAGAAGCAAAAGATAGGTTGTT
ATTGAAAATTCCAATTTTTGGACCTTTGGTACAAAAAGCTGCAGTGGCACGTTACGCGCGAACCTTAGCGACTACTTTTG
CGGCTGGTGTTCCACTCGTCGATGCCCTAGACTCTGCTGCTGGTGCTTCTGGCAATACGGTATACAAGAAAGCCATTATG
AAAATTAAGGAAGATGTTACAAGCGGCTTACAGATTAATATGGCAATGACTTCTACAGGTGTATTCCCCAATATGGTTAA
CCAGATGGTAGCGATTGGTGAGGAAGCGGGTTCAGTTGACACTATGTTATCAAAGGTTGCTGATATCTATGAAGCCGAAG
TTGATGATGCTGTTGATGGTTTGAGTTCTTTGATCGAACCGTTTGTTATTGTCTTTATCGGTGGCCTTGTTGGTACCATT
ATTGTTGCTATGTATCTACCAATCTTTAAGCTTGGTGATGCATTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(81-204)

Type II secretion system (T2SS), protein F (T2SSF)

(286-407)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F6RD55

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baylyi ADP1

56.79

97.59

0.554
  pilC Pseudomonas stutzeri DSM 10701

56.219

96.867

0.545
  pilC Acinetobacter baumannii D1279779

54.975

96.867

0.533
  pilC Legionella pneumophila strain ERS1305867

54.937

95.181

0.523
  pilG Neisseria meningitidis 44/76-A

42.963

97.59

0.419
  pilG Neisseria gonorrhoeae MS11

43.5

96.386

0.419
  pilC Vibrio cholerae strain A1552

42.64

94.94

0.405
  pilC Vibrio campbellii strain DS40M4

41.519

95.181

0.395
  pilC Thermus thermophilus HB27

39.098

96.145

0.376

Multiple sequence alignment