Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PG1C_RS00900 Genome accession   NZ_CP010554
Coordinates   162625..163857 (-) Length   410 a.a.
NCBI ID   WP_202635578.1    Uniprot ID   A0A0C5J5X2
Organism   Rugosibacter aromaticivorans strain Ca6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 157625..168857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PG1C_RS00870 - 158043..158507 (-) 465 WP_202635572.1 barstar family protein -
  PG1C_RS00875 (PG1C_00845) - 158504..158848 (-) 345 WP_202635573.1 ribonuclease domain-containing protein -
  PG1C_RS00880 (PG1C_00850) aspS 158855..160660 (-) 1806 WP_202635574.1 aspartate--tRNA ligase -
  PG1C_RS00885 (PG1C_00855) - 160709..161329 (-) 621 WP_202635575.1 DUF502 domain-containing protein -
  PG1C_RS00890 (PG1C_00860) - 161359..161673 (-) 315 WP_202635576.1 FmdB family zinc ribbon protein -
  PG1C_RS00895 (PG1C_00865) pilD 161758..162615 (-) 858 WP_202635577.1 prepilin peptidase Machinery gene
  PG1C_RS00900 (PG1C_00870) pilC 162625..163857 (-) 1233 WP_202635578.1 type II secretion system F family protein Machinery gene
  PG1C_RS00905 (PG1C_00875) - 163915..165186 (-) 1272 WP_202635579.1 HlyC/CorC family transporter -
  PG1C_RS00910 (PG1C_00880) - 165210..166058 (-) 849 WP_202635580.1 inner membrane protein YpjD -
  PG1C_RS00915 (PG1C_00885) ffh 166099..167454 (+) 1356 WP_202635581.1 signal recognition particle protein -
  PG1C_RS00920 (PG1C_00890) brnA 167716..167988 (-) 273 WP_202635582.1 type II toxin-antitoxin system BrnA family antitoxin -
  PG1C_RS00925 (PG1C_00895) - 168044..168649 (-) 606 WP_237218238.1 lytic transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 43814.57 Da        Isoelectric Point: 10.0246

>NTDB_id=139172 PG1C_RS00900 WP_202635578.1 162625..163857(-) (pilC) [Rugosibacter aromaticivorans strain Ca6]
MATTTTAQKKILVKEASFLWEGKNRTGKVVRGEMNAPSLAVAQVALRRQGILVSKLKQKKIGSGGKVTDKDITLFTRQLA
TMVKSGVPLLQSFDIVGKGTNNPALARLLISIKTDVETGASLATAFRKYPIHFDALFCNLVAAGEQAGILDTLLDRLASY
KEKIQAIKSKLKSAMFYPTSILVVAFVITAVIMIFVVPAFKGVFASFGGDLPGPTLVVIAISDGFVANWHIIFGALFAAI
YGMVYAFKRSRAFQIAVDKYALKLPVFGDLIRKTSIARWTRTLSTMFAAGVPLVEALDSVGGASGNYVYATATQQIQNEV
STGSSLTVAMQNSDVFPPMVTQMVAIGEESGQLDSMLGKVADFFEAEVDDAVGALSSLMEPIIMVFLGVLIGGLVVAMYL
PIFKLGSVVG

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=139172 PG1C_RS00900 WP_202635578.1 162625..163857(-) (pilC) [Rugosibacter aromaticivorans strain Ca6]
ATGGCGACAACGACAACGGCGCAAAAAAAAATTCTTGTAAAAGAGGCAAGCTTTCTTTGGGAAGGCAAGAATAGAACCGG
CAAAGTTGTCCGTGGCGAAATGAATGCACCCAGCTTGGCTGTTGCGCAGGTAGCCTTGCGCCGACAGGGGATTTTGGTCA
GCAAGCTGAAACAGAAAAAAATCGGCTCTGGCGGCAAAGTCACCGACAAGGACATCACGCTATTTACCCGTCAGCTTGCC
ACGATGGTTAAGTCTGGCGTGCCTCTATTGCAGTCCTTTGACATTGTTGGTAAGGGTACCAACAACCCCGCGCTCGCCAG
ACTGTTGATCAGCATAAAAACGGATGTTGAAACAGGGGCTAGTCTAGCCACTGCATTTCGCAAATACCCAATCCATTTCG
ATGCGTTGTTCTGCAATCTTGTCGCTGCGGGTGAGCAAGCGGGGATTCTGGACACACTGCTTGATCGGCTAGCAAGCTAC
AAAGAAAAAATTCAGGCGATCAAGTCCAAGCTGAAAAGCGCGATGTTCTACCCAACATCGATTCTGGTGGTCGCCTTTGT
TATCACAGCGGTAATCATGATTTTCGTTGTTCCCGCGTTCAAAGGCGTATTCGCCAGTTTTGGCGGTGATCTGCCGGGTC
CTACCTTGGTCGTTATCGCCATTTCCGATGGTTTTGTGGCGAACTGGCATATTATCTTCGGCGCTCTATTTGCCGCTATC
TATGGCATGGTGTACGCTTTCAAGCGCTCACGCGCCTTCCAGATCGCAGTGGACAAATATGCGCTCAAGCTACCCGTCTT
TGGCGATCTGATTCGCAAAACCTCTATCGCCCGCTGGACACGTACTTTATCCACCATGTTTGCCGCAGGTGTACCCCTTG
TTGAGGCGCTGGATTCCGTCGGAGGTGCATCAGGCAACTACGTCTATGCCACTGCTACCCAACAGATTCAAAACGAGGTG
AGTACCGGCTCGAGCCTGACAGTCGCTATGCAAAACTCGGATGTATTTCCGCCCATGGTGACGCAAATGGTCGCTATTGG
CGAAGAATCAGGGCAGCTCGATTCAATGCTGGGCAAGGTGGCTGACTTTTTCGAGGCTGAGGTTGACGATGCTGTCGGTG
CGCTGTCCAGCCTGATGGAGCCCATCATCATGGTATTTCTTGGTGTGCTTATCGGTGGCCTCGTCGTTGCGATGTACCTA
CCCATCTTCAAGCTTGGCTCGGTTGTCGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)

Type II secretion system (T2SS), protein F (T2SSF)

(279-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0C5J5X2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

53.904

96.829

0.522
  pilC Acinetobacter baumannii D1279779

53.266

97.073

0.517
  pilC Pseudomonas stutzeri DSM 10701

51.724

99.024

0.512
  pilC Acinetobacter baylyi ADP1

51.134

96.829

0.495
  pilG Neisseria gonorrhoeae MS11

49.874

96.829

0.483
  pilG Neisseria meningitidis 44/76-A

49.118

96.829

0.476
  pilC Vibrio cholerae strain A1552

40.452

97.073

0.393
  pilC Vibrio campbellii strain DS40M4

38.35

100

0.385
  pilC Thermus thermophilus HB27

37.94

97.073

0.368

Multiple sequence alignment