Detailed information NTG0139171

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PG1C_RS00895
• Genome accession: NZ_CP010554
• Coordinates: 161758..162615 (-)
• Length: 285 a.a.
• NCBI ID: WP_202635577.1
• Uniprot ID: A0A0C5J6W4
• Organism: Rugosibacter aromaticivorans strain Ca6
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 156758..167615

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PG1C_RS00855 (PG1C_00830)	-	156895..157392 (+)	498	WP_202635569.1	DoxX family protein	-
PG1C_RS14940	-	157389..157604 (+)	216	WP_202635570.1	cysteine-rich CWC family protein	-
PG1C_RS00865 (PG1C_00835)	nudB	157579..158019 (-)	441	WP_202635571.1	dihydroneopterin triphosphate diphosphatase	-
PG1C_RS00870	-	158043..158507 (-)	465	WP_202635572.1	barstar family protein	-
PG1C_RS00875 (PG1C_00845)	-	158504..158848 (-)	345	WP_202635573.1	ribonuclease domain-containing protein	-
PG1C_RS00880 (PG1C_00850)	aspS	158855..160660 (-)	1806	WP_202635574.1	aspartate--tRNA ligase	-
PG1C_RS00885 (PG1C_00855)	-	160709..161329 (-)	621	WP_202635575.1	DUF502 domain-containing protein	-
PG1C_RS00890 (PG1C_00860)	-	161359..161673 (-)	315	WP_202635576.1	FmdB family zinc ribbon protein	-
PG1C_RS00895 (PG1C_00865)	pilD	161758..162615 (-)	858	WP_202635577.1	prepilin peptidase	Machinery gene
PG1C_RS00900 (PG1C_00870)	pilC	162625..163857 (-)	1233	WP_202635578.1	type II secretion system F family protein	Machinery gene
PG1C_RS00905 (PG1C_00875)	-	163915..165186 (-)	1272	WP_202635579.1	HlyC/CorC family transporter	-
PG1C_RS00910 (PG1C_00880)	-	165210..166058 (-)	849	WP_202635580.1	inner membrane protein YpjD	-
PG1C_RS00915 (PG1C_00885)	ffh	166099..167454 (+)	1356	WP_202635581.1	signal recognition particle protein	-

Sequence

Protein

• Length: 285 a.a.
• Molecular weight: 31038.00 Da
• Isoelectric Point: 8.3327

>NTDB_id=139171 PG1C_RS00895 WP_202635577.1 161758..162615(-) (pilD) [Rugosibacter aromaticivorans strain Ca6]
MSALWFTDPSVVVLIASVLGLMVGSFLNVVIHRLPIMMERDWAVQCADLRGDTPPVFEPLSLSRPRSRCPKCSHAITATE
NIPLFSWFFLRGRCSACKTPISIRYPLIELATAALFAFAAMHFGLTAAGWGALIFIAALISLTGIDYDTRLLPDDITLPL
LWIGLLFNLFGTYTDLKSAVIGAIAGYLSLWSVYWLFKLVTGKEGMGYGDFKLLAALGAWLGWQMLPLTILLSSLVGAVV
GILLMVMSKHGRQEPIPFGPYLAAAGIVALIWGKPLTQAYLGTTL

Nucleotide

• Length: 858 bp

>NTDB_id=139171 PG1C_RS00895 WP_202635577.1 161758..162615(-) (pilD) [Rugosibacter aromaticivorans strain Ca6]
ATGAGCGCCTTGTGGTTTACGGATCCGTCGGTGGTTGTTTTGATCGCCAGCGTGCTGGGCTTGATGGTTGGCAGCTTTCT
TAATGTCGTGATTCACCGTTTGCCTATCATGATGGAGCGCGATTGGGCCGTGCAATGTGCCGATTTGCGCGGTGACACGC
CACCCGTTTTTGAGCCACTCAGTCTGTCTCGTCCGCGCTCGCGTTGCCCCAAATGTAGCCATGCCATTACGGCGACTGAG
AATATCCCGCTCTTTAGCTGGTTTTTTCTGCGTGGCCGTTGCAGCGCTTGCAAAACACCGATCTCTATTCGCTACCCCTT
GATAGAACTAGCGACAGCGGCGTTGTTTGCCTTCGCTGCCATGCACTTTGGTTTAACTGCTGCGGGTTGGGGCGCGCTAA
TTTTTATCGCGGCGCTGATTTCACTCACAGGCATCGACTACGATACGCGACTGCTACCCGATGACATTACGCTACCGCTG
CTATGGATTGGTTTGCTATTTAATCTGTTTGGCACATATACCGATCTTAAAAGTGCAGTGATTGGGGCTATAGCAGGCTA
TCTGTCCCTTTGGAGCGTGTATTGGCTATTCAAGCTTGTCACCGGCAAAGAGGGCATGGGTTACGGCGACTTTAAATTAT
TGGCGGCCCTCGGTGCCTGGCTGGGGTGGCAAATGCTTCCCTTGACTATTCTGTTATCCTCCCTGGTGGGCGCCGTGGTC
GGCATCCTGCTCATGGTGATGTCAAAACACGGCCGCCAGGAGCCCATTCCTTTCGGGCCTTATCTTGCCGCAGCGGGGAT
CGTTGCCTTGATCTGGGGCAAACCGCTCACTCAGGCTTATCTCGGCACCACGCTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-123)

• Type IV leader peptidase family (Peptidase_A24) (134-242)

3D structure

• AlphaFold DB: A0A0C5J6W4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.282	99.649	0.551
pilD	Vibrio campbellii strain DS40M4	53.214	98.246	0.523
pilD	Acinetobacter nosocomialis M2	50	98.947	0.495
pilD	Acinetobacter baumannii D1279779	49.291	98.947	0.488
pilD	Neisseria gonorrhoeae MS11	52.918	90.175	0.477