Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYC   Type   Machinery gene
Locus tag   SD90_RS00660 Genome accession   NZ_CP010450
Coordinates   103786..104112 (+) Length   108 a.a.
NCBI ID   WP_002986552.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NGAS638     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 98786..109112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD90_RS00645 (SD90_00645) - 101418..101783 (+) 366 WP_002986560.1 DUF1033 family protein -
  SD90_RS00650 (SD90_00650) comYA 101876..102814 (+) 939 WP_002993471.1 competence type IV pilus ATPase ComGA Machinery gene
  SD90_RS00655 (SD90_00655) comYB 102750..103784 (+) 1035 WP_225793059.1 competence type IV pilus assembly protein ComGB Machinery gene
  SD90_RS00660 (SD90_00660) comYC 103786..104112 (+) 327 WP_002986552.1 competence type IV pilus major pilin ComGC Machinery gene
  SD90_RS00665 (SD90_00665) comGD 104087..104515 (+) 429 WP_023605232.1 competence type IV pilus minor pilin ComGD -
  SD90_RS00670 (SD90_00670) comGE 104472..104756 (+) 285 WP_011284422.1 competence type IV pilus minor pilin ComGE -
  SD90_RS00675 (SD90_00675) comYF 104749..105183 (+) 435 WP_002992738.1 competence type IV pilus minor pilin ComGF Machinery gene
  SD90_RS00680 (SD90_00680) comGG 105167..105493 (+) 327 WP_002992739.1 competence type IV pilus minor pilin ComGG -
  SD90_RS00685 (SD90_00685) comYH 105591..106544 (+) 954 WP_002987790.1 class I SAM-dependent methyltransferase Machinery gene
  SD90_RS00690 (SD90_00690) - 106603..107799 (+) 1197 WP_032463122.1 acetate kinase -
  SD90_RS00695 (SD90_00695) - 107985..108293 (+) 309 WP_032463123.1 hypothetical protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12376.36 Da        Isoelectric Point: 9.8992

>NTDB_id=137366 SD90_RS00660 WP_002986552.1 103786..104112(+) (comYC) [Streptococcus pyogenes strain NGAS638]
MINQWNNLRHKKLKGFTLLEMLLVILVISVLMLLFVPNLSKQKDRVTETGNAAVVKLVENQAELYELSQGSKPSLSQLKA
DGSITEKQEKAYQDYYDKHKNEKARLSN

Nucleotide


Download         Length: 327 bp        

>NTDB_id=137366 SD90_RS00660 WP_002986552.1 103786..104112(+) (comYC) [Streptococcus pyogenes strain NGAS638]
ATGATTAATCAATGGAACAACTTACGACACAAGAAGCTAAAAGGATTTACTCTTCTAGAAATGTTATTGGTGATTCTTGT
CATCAGTGTTTTGATGCTATTATTTGTGCCTAATTTAAGCAAGCAAAAAGACAGGGTTACAGAAACAGGTAATGCCGCTG
TTGTTAAATTAGTGGAGAATCAAGCAGAACTATATGAATTATCTCAAGGCTCAAAACCAAGTTTGAGCCAGTTAAAGGCA
GATGGTAGTATCACTGAGAAACAAGAAAAAGCTTATCAAGACTATTATGACAAACATAAAAATGAAAAAGCCCGTCTTAG
CAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYC Streptococcus gordonii str. Challis substr. CH1

56.19

97.222

0.546
  comGC Lactococcus lactis subsp. cremoris KW2

56.863

94.444

0.537
  comGC/cglC Streptococcus mitis SK321

61.957

85.185

0.528
  comGC/cglC Streptococcus pneumoniae R6

60.87

85.185

0.519
  comGC/cglC Streptococcus pneumoniae TIGR4

60.87

85.185

0.519
  comGC/cglC Streptococcus pneumoniae D39

60.87

85.185

0.519
  comGC/cglC Streptococcus mitis NCTC 12261

60.87

85.185

0.519
  comGC/cglC Streptococcus pneumoniae Rx1

60.87

85.185

0.519
  comYC Streptococcus mutans UA140

55.208

88.889

0.491
  comYC Streptococcus mutans UA159

55.208

88.889

0.491
  comYC Streptococcus suis isolate S10

59.259

75

0.444

Multiple sequence alignment