Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   SD90_RS00685 Genome accession   NZ_CP010450
Coordinates   105591..106544 (+) Length   317 a.a.
NCBI ID   WP_002987790.1    Uniprot ID   A0A5S4TCX5
Organism   Streptococcus pyogenes strain NGAS638     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 100591..111544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD90_RS00645 (SD90_00645) - 101418..101783 (+) 366 WP_002986560.1 DUF1033 family protein -
  SD90_RS00650 (SD90_00650) comYA 101876..102814 (+) 939 WP_002993471.1 competence type IV pilus ATPase ComGA Machinery gene
  SD90_RS00655 (SD90_00655) comYB 102750..103784 (+) 1035 WP_225793059.1 competence type IV pilus assembly protein ComGB Machinery gene
  SD90_RS00660 (SD90_00660) comYC 103786..104112 (+) 327 WP_002986552.1 competence type IV pilus major pilin ComGC Machinery gene
  SD90_RS00665 (SD90_00665) comGD 104087..104515 (+) 429 WP_023605232.1 competence type IV pilus minor pilin ComGD -
  SD90_RS00670 (SD90_00670) comGE 104472..104756 (+) 285 WP_011284422.1 competence type IV pilus minor pilin ComGE -
  SD90_RS00675 (SD90_00675) comYF 104749..105183 (+) 435 WP_002992738.1 competence type IV pilus minor pilin ComGF Machinery gene
  SD90_RS00680 (SD90_00680) comGG 105167..105493 (+) 327 WP_002992739.1 competence type IV pilus minor pilin ComGG -
  SD90_RS00685 (SD90_00685) comYH 105591..106544 (+) 954 WP_002987790.1 class I SAM-dependent methyltransferase Machinery gene
  SD90_RS00690 (SD90_00690) - 106603..107799 (+) 1197 WP_032463122.1 acetate kinase -
  SD90_RS00695 (SD90_00695) - 107985..108293 (+) 309 WP_032463123.1 hypothetical protein -
  SD90_RS00700 (SD90_00700) proC 108376..109146 (-) 771 WP_002992745.1 pyrroline-5-carboxylate reductase -
  SD90_RS00705 (SD90_00705) pepA 109194..110261 (-) 1068 WP_002992747.1 glutamyl aminopeptidase -
  SD90_RS00710 (SD90_00710) - 110726..111010 (+) 285 WP_002992749.1 DUF4651 domain-containing protein -
  SD90_RS00715 (SD90_00715) - 111007..111324 (+) 318 WP_002992751.1 thioredoxin family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35985.08 Da        Isoelectric Point: 4.7205

>NTDB_id=137368 SD90_RS00685 WP_002987790.1 105591..106544(+) (comYH) [Streptococcus pyogenes strain NGAS638]
MTFEKIEEAYQLLLENCQLIENDLKTHIYDAIVEQNSFYLGAEGASPQVAQNSDKLKALCLTKEEWRKAYQFLFIKAAQT
EQLQANHQFTPDAIGFILLYLLEQLSDKDSLEVLEIGSGTGNLAQTLLNNTSKSLDYVGIELDDLLIDLSASIAEIMDSS
AHFIQEDAVRPQLLKESDIVISDLPVGYYPNDDIAKRYKVASSDKHTYAHHLLMEQSLKYLKKDGFAIFLAPVNLLTSPQ
SQLLKQWLKDYAQVVALITLPDSIFGHPSNAKSIIVLQKQTDHPMETFVYPIRDLKLAENIHDFMENFKKWKLSNVN

Nucleotide


Download         Length: 954 bp        

>NTDB_id=137368 SD90_RS00685 WP_002987790.1 105591..106544(+) (comYH) [Streptococcus pyogenes strain NGAS638]
ATGACTTTTGAAAAAATTGAAGAAGCTTATCAGCTGCTCTTAGAGAACTGTCAACTAATTGAAAATGATCTAAAAACACA
TATATACGATGCCATTGTTGAACAAAACTCCTTTTATTTAGGGGCTGAGGGAGCTAGTCCTCAAGTTGCTCAAAATAGTG
ATAAACTGAAAGCCTTGTGCCTGACAAAAGAAGAATGGCGTAAGGCCTACCAGTTTCTTTTTATTAAGGCAGCTCAGACT
GAGCAACTCCAAGCCAACCATCAGTTCACACCAGATGCTATTGGCTTCATTCTGCTGTATCTTTTGGAACAATTGAGTGA
TAAAGATAGCTTAGAGGTACTTGAGATTGGAAGTGGAACAGGGAACCTAGCCCAAACCCTTCTCAACAACACGAGCAAGA
GCCTTGATTATGTAGGGATTGAACTTGATGATCTCTTGATTGATCTGTCAGCCAGTATTGCTGAGATAATGGATTCTTCA
GCTCATTTTATTCAAGAAGATGCGGTAAGGCCTCAATTACTAAAAGAAAGTGACATTGTCATCAGTGACTTACCAGTTGG
TTATTATCCTAACGATGATATTGCCAAACGGTACAAGGTGGCTAGTTCAGATAAGCATACCTATGCCCATCATTTATTAA
TGGAACAGTCTTTAAAATACTTGAAAAAAGACGGTTTTGCGATTTTTCTGGCACCAGTCAATTTATTGACGAGCCCTCAG
AGCCAGTTATTGAAACAGTGGTTAAAAGATTATGCTCAGGTGGTGGCCTTGATTACACTACCAGATTCTATTTTTGGTCA
TCCCTCAAATGCCAAGTCCATTATTGTCTTACAAAAACAAACAGACCACCCAATGGAAACCTTTGTCTATCCAATTCGGG
ATTTGAAGCTTGCAGAGAATATTCATGATTTTATGGAAAATTTCAAAAAATGGAAACTGAGTAATGTCAATTAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(68-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5S4TCX5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

66.139

99.685

0.659
  comYH Streptococcus mutans UA140

65.823

99.685

0.656

Multiple sequence alignment