Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AO356_RS11310 Genome accession   NZ_CP012831
Coordinates   2560441..2561535 (+) Length   364 a.a.
NCBI ID   WP_060739851.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain FW300-N2C3     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2555441..2566535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AO356_RS11290 (AO356_11275) rsmB 2556321..2557631 (-) 1311 WP_060739848.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  AO356_RS11295 (AO356_11280) fmt 2557628..2558587 (-) 960 WP_060739849.1 methionyl-tRNA formyltransferase -
  AO356_RS11300 (AO356_11285) def 2558658..2559164 (-) 507 WP_003196300.1 peptide deformylase -
  AO356_RS11305 (AO356_11290) tsaP 2559335..2560360 (+) 1026 WP_060739850.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  AO356_RS11310 (AO356_11295) dprA 2560441..2561535 (+) 1095 WP_060739851.1 DNA-processing protein DprA Machinery gene
  AO356_RS11315 (AO356_11300) - 2561597..2562154 (+) 558 WP_060739852.1 L-threonylcarbamoyladenylate synthase -
  AO356_RS11320 (AO356_11305) - 2562578..2563555 (-) 978 WP_060739853.1 quinone oxidoreductase family protein -
  AO356_RS11325 (AO356_11310) hemF 2563719..2564633 (+) 915 WP_060739854.1 oxygen-dependent coproporphyrinogen oxidase -
  AO356_RS11330 (AO356_11315) aroE 2564647..2565468 (+) 822 WP_060739855.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 38448.15 Da        Isoelectric Point: 7.0666

>NTDB_id=136723 AO356_RS11310 WP_060739851.1 2560441..2561535(+) (dprA) [Pseudomonas fluorescens strain FW300-N2C3]
MSLPESAPVSPAELEARLRLHRLPELGPKRFMTLMEAFGSASKAISAPASAWRALGLPIACAEARRNPDVRDGAAHALAW
LERAGQHLLMWDQPDYPALLAQISDAPPLLFVAGDATILEKPQLAMVGSRRASRPGMDTAAAFSRSLAGAGFVITSGLAL
GIDAAAHQAALDVGGRTVGVLGTGLENFYPQRNRRLADAMIAQGSAVLSEFPLDAPPHASNFPRRNRIISGLSLGVLVVE
ASVASGSLITARLAAEQGREVYAIPGSIHHPGARGCHQLIRDGAALVETVEHILEALRGWQQLPLAATPEPVTHPLLRLL
HAAPLSSEALADASGWGLPKVLAALTELEMEGRATCDNGRWFAR

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=136723 AO356_RS11310 WP_060739851.1 2560441..2561535(+) (dprA) [Pseudomonas fluorescens strain FW300-N2C3]
ATGTCATTACCTGAATCTGCTCCGGTTTCCCCTGCGGAACTGGAGGCCCGGCTACGTCTTCACCGCTTGCCGGAACTCGG
TCCCAAGCGTTTCATGACCCTGATGGAGGCCTTCGGCTCGGCCTCCAAAGCCATCAGTGCACCGGCCAGCGCCTGGCGAG
CACTGGGCCTGCCGATCGCCTGCGCCGAGGCGCGACGCAACCCGGATGTGCGTGACGGCGCCGCCCATGCATTGGCCTGG
CTAGAGCGTGCGGGCCAGCATTTACTGATGTGGGACCAACCCGACTACCCGGCGCTGCTGGCACAGATCAGCGACGCGCC
ACCGCTGCTGTTCGTCGCGGGCGACGCCACCATTCTGGAAAAACCGCAGCTGGCGATGGTCGGCAGTCGCCGGGCATCGC
GACCGGGCATGGACACCGCGGCGGCGTTTTCCCGCAGCCTGGCCGGGGCCGGTTTTGTCATCACCAGCGGCCTGGCCTTG
GGCATCGATGCGGCGGCCCATCAGGCGGCGCTGGACGTTGGCGGGCGCACCGTCGGCGTGTTGGGCACCGGCCTGGAAAA
TTTTTATCCACAGCGCAATCGTCGGCTGGCGGACGCGATGATTGCCCAAGGCAGCGCGGTGCTGTCGGAGTTTCCGTTGG
ACGCGCCGCCTCACGCCAGCAACTTTCCGCGTCGCAACCGGATCATCAGCGGTTTGTCCCTGGGGGTGCTGGTGGTGGAA
GCCAGTGTCGCCAGCGGCTCGCTGATCACCGCCCGACTGGCGGCGGAACAGGGCCGCGAGGTGTATGCCATTCCTGGATC
GATCCATCACCCCGGCGCCCGGGGCTGCCATCAGCTGATCCGCGACGGTGCGGCGCTGGTGGAAACCGTCGAGCACATCC
TTGAAGCGTTGCGCGGTTGGCAGCAGTTGCCGCTGGCCGCGACGCCTGAGCCGGTGACCCATCCGCTGCTGCGCCTGCTG
CACGCCGCGCCGCTGAGCAGCGAGGCCTTGGCCGATGCCAGCGGCTGGGGCTTGCCCAAAGTGTTGGCAGCGTTGACCGA
GCTGGAAATGGAAGGACGCGCGACCTGTGACAACGGGCGCTGGTTTGCACGCTAG

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(81-288)

DprA winged helix domain (WHD_DprA)

(305-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

41.779

100

0.426
  dprA Legionella pneumophila strain ERS1305867

42.609

94.78

0.404
  dprA Neisseria meningitidis MC58

48.097

79.396

0.382
  dprA Neisseria meningitidis strain C311

48.097

79.396

0.382
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

44.805

84.615

0.379
  dprA Vibrio cholerae strain A1552

44.805

84.615

0.379
  dprA Glaesserella parasuis strain SC1401

45.973

81.868

0.376
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

38.81

96.978

0.376
  dprA Neisseria gonorrhoeae strain FA1090

45.638

81.868

0.374
  dprA Neisseria gonorrhoeae MS11

45.302

81.868

0.371

Multiple sequence alignment