Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   AO356_RS11305 Genome accession   NZ_CP012831
Coordinates   2559335..2560360 (+) Length   341 a.a.
NCBI ID   WP_060739850.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain FW300-N2C3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2554335..2565360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AO356_RS11280 (AO356_11265) - 2554434..2554745 (-) 312 WP_060739846.1 tetratricopeptide repeat protein -
  AO356_RS11285 (AO356_11270) trkA 2554923..2556296 (-) 1374 WP_060739847.1 Trk system potassium transporter TrkA -
  AO356_RS11290 (AO356_11275) rsmB 2556321..2557631 (-) 1311 WP_060739848.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  AO356_RS11295 (AO356_11280) fmt 2557628..2558587 (-) 960 WP_060739849.1 methionyl-tRNA formyltransferase -
  AO356_RS11300 (AO356_11285) def 2558658..2559164 (-) 507 WP_003196300.1 peptide deformylase -
  AO356_RS11305 (AO356_11290) tsaP 2559335..2560360 (+) 1026 WP_060739850.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  AO356_RS11310 (AO356_11295) dprA 2560441..2561535 (+) 1095 WP_060739851.1 DNA-processing protein DprA Machinery gene
  AO356_RS11315 (AO356_11300) - 2561597..2562154 (+) 558 WP_060739852.1 L-threonylcarbamoyladenylate synthase -
  AO356_RS11320 (AO356_11305) - 2562578..2563555 (-) 978 WP_060739853.1 quinone oxidoreductase family protein -
  AO356_RS11325 (AO356_11310) hemF 2563719..2564633 (+) 915 WP_060739854.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37388.60 Da        Isoelectric Point: 7.0306

>NTDB_id=136722 AO356_RS11305 WP_060739850.1 2559335..2560360(+) (tsaP) [Pseudomonas fluorescens strain FW300-N2C3]
MRKSLLALLLLASAGIAHGQVQLREGFPQQYTVVTGDTLWDISGKYLREPWKWPELWQANPQIENPNLIYPGDTLSLVYV
NGQPRLTLNRGASRGTIKLSPRIRSSPVADAIPSIPLQAINSFLLSNRIVDTPEDFDKAPYVVAGNAERVLSGMGDRVFA
RGTFDSNQSAYGIFRQGKVYTDPETKEFLGINADDIGGGEVVATEGDVTTLALQRTTQEVRLGDRLFSGEERSINSTFMP
SAPKSDINGLILDVPRGVTQIGALDVVTLNKGRRDGLIEGNVLAVMKTGETVRDRITGEPVKIPDERAGLLMVFRTYDKL
SYGLVLYASRSLSVLDKVRNP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=136722 AO356_RS11305 WP_060739850.1 2559335..2560360(+) (tsaP) [Pseudomonas fluorescens strain FW300-N2C3]
ATGAGGAAATCACTACTCGCCCTGCTGCTCCTGGCTTCGGCCGGTATCGCGCATGGGCAAGTGCAACTTCGGGAAGGTTT
TCCCCAGCAATACACGGTGGTGACGGGGGACACATTGTGGGACATTTCCGGCAAATACCTGCGCGAGCCGTGGAAATGGC
CCGAACTCTGGCAGGCCAACCCGCAGATCGAAAACCCCAACCTGATCTATCCGGGCGATACCCTGTCGCTGGTCTACGTC
AACGGCCAGCCGCGCCTGACCCTCAATCGCGGCGCCTCCCGCGGCACCATCAAGCTGTCGCCACGCATTCGCAGTTCGCC
GGTGGCCGACGCCATCCCGAGCATTCCGCTGCAAGCCATCAACAGCTTCCTGCTGAGCAACCGCATCGTCGATACGCCTG
AGGATTTCGACAAGGCGCCCTACGTCGTCGCCGGCAATGCCGAGCGGGTGCTCAGTGGCATGGGGGATCGGGTCTTCGCC
CGTGGCACATTCGACTCGAACCAGTCGGCCTACGGCATCTTCCGCCAGGGCAAGGTCTACACCGACCCCGAGACCAAGGA
ATTTCTGGGCATCAACGCCGACGACATCGGCGGCGGCGAAGTGGTCGCCACCGAGGGCGATGTCACCACCCTGGCCCTGC
AGCGCACCACCCAGGAAGTGCGCCTGGGTGATCGCCTGTTCAGCGGCGAAGAGCGCTCGATCAATTCGACCTTCATGCCC
AGCGCGCCAAAATCGGACATCAACGGGTTGATCCTGGACGTGCCCCGGGGCGTGACCCAGATCGGCGCGCTGGACGTGGT
CACCCTGAACAAGGGCCGCCGCGATGGGCTGATCGAAGGCAACGTACTGGCGGTGATGAAGACCGGTGAAACCGTGCGCG
ACCGCATCACTGGCGAGCCGGTGAAAATCCCCGATGAGCGGGCCGGCCTGCTGATGGTGTTCCGCACTTACGACAAGCTC
AGCTACGGCTTGGTGCTGTACGCCTCGCGCTCGCTGTCGGTGCTGGACAAGGTCCGTAATCCATAA

Domains

Predicted by InterProScan.

LysM domain (LysM)

(31-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

34.605

100

0.372