Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   RR32_RS16430 Genome accession   NZ_CP010368
Coordinates   3501404..3502630 (+) Length   408 a.a.
NCBI ID   WP_039249002.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain 6411     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3496404..3507630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RR32_RS16395 (RR32_16400) rimP 3497076..3497600 (-) 525 WP_002157009.1 ribosome maturation factor RimP -
  RR32_RS16415 (RR32_16420) secG 3498237..3498566 (-) 330 WP_002156913.1 preprotein translocase subunit SecG -
  RR32_RS16420 (RR32_16425) tpiA 3498579..3499373 (-) 795 WP_032047906.1 triose-phosphate isomerase -
  RR32_RS16425 (RR32_16430) pilB 3499664..3501376 (+) 1713 WP_004710829.1 type IV-A pilus assembly ATPase PilB Machinery gene
  RR32_RS16430 (RR32_16435) pilC 3501404..3502630 (+) 1227 WP_039249002.1 type II secretion system F family protein Machinery gene
  RR32_RS20340 (RR32_16440) pilD 3502630..3503490 (+) 861 WP_032047902.1 prepilin peptidase Machinery gene
  RR32_RS16440 (RR32_16445) coaE 3503492..3504088 (+) 597 WP_032047901.1 dephospho-CoA kinase -
  RR32_RS16445 (RR32_16450) - 3504085..3504999 (-) 915 WP_031955876.1 DMT family transporter -
  RR32_RS16450 (RR32_16455) rlmB 3505035..3505784 (-) 750 WP_004883555.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  RR32_RS16455 (RR32_16460) - 3505886..3506212 (-) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -
  RR32_RS16460 (RR32_16465) - 3506289..3507599 (-) 1311 WP_032047898.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45028.61 Da        Isoelectric Point: 10.0117

>NTDB_id=136631 RR32_RS16430 WP_039249002.1 3501404..3502630(+) (pilC) [Acinetobacter nosocomialis strain 6411]
MAVKKAQMMPTFAYEGVDRKGVKIKGELPAKNMALAKVTLRKQGVTVRTIREKRKNILEGLFKKKVTTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLKNPAMREVVLGIKSEVEGGSTFASALKKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAIVVTIILMVKVVPVFQDLFASFGAELPAFTQMVVNMSKWMQEYWFIMIIAIGVFIA
AFLEAKKRSKKFRDGLDKLALKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEQAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVI

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=136631 RR32_RS16430 WP_039249002.1 3501404..3502630(+) (pilC) [Acinetobacter nosocomialis strain 6411]
ATGGCTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCGTAAAAATTAAAGGAGA
ACTTCCGGCTAAAAATATGGCTTTAGCCAAAGTAACCTTACGCAAACAAGGGGTGACTGTTCGAACTATACGTGAAAAAC
GTAAAAATATTCTTGAAGGTTTATTTAAGAAAAAAGTCACCACACTCGATATTACGATTTTTACCCGACAACTGGCGACC
ATGATGAAAGCTGGTGTACCTCTAGTACAAGGCTTTGAAATTGTAGCAGAAGGTTTAAAAAACCCTGCCATGCGAGAGGT
TGTCCTCGGTATTAAAAGTGAAGTTGAAGGTGGTAGTACCTTTGCCTCAGCTTTAAAAAAGTACCCTCAACATTTTGATA
ACTTGTTTTGTTCACTTGTTGAATCTGGTGAACAATCAGGTGCACTCGAAACGATGTTGGACCGCGTTGCAATTTATAAA
GAAAAAAGTGAGTTGCTCAAGCAAAAAATTAAGAAAGCAATGAAATACCCTGCAACAGTTATTGTGGTAGCCATTGTGGT
GACTATTATTTTGATGGTTAAAGTAGTCCCCGTTTTTCAGGATTTATTTGCTTCTTTCGGCGCAGAATTACCAGCATTCA
CACAAATGGTCGTGAATATGTCGAAATGGATGCAGGAATACTGGTTCATTATGATTATTGCGATTGGTGTATTTATTGCT
GCGTTTTTAGAAGCAAAAAAACGTAGTAAAAAGTTTCGTGATGGCTTAGATAAACTGGCGCTTAAGTTACCTATTTTCGG
AGATCTGGTTTATAAAGCAATTATTGCCCGTTATAGCCGCACGCTTGCTACAACATTTGCCGCAGGTGTCCCGCTTATTG
ATGCACTAGAGTCGACTGCAGGCGCAACAAATAATGTCATTTATGAGCAAGCTGTGATGAAAATTCGTGAAGATGTGGCA
ACCGGTCAACAACTTCAATTTGCTATGCGAGTATCTAATCGTTTTCCATCTATGGCTATACAAATGGTTGCAATTGGTGA
AGAATCGGGTGCACTAGACAGCATGCTCGATAAAGTTGCCACTTACTATGAAAATGAAGTGGATAATGCCGTTGATGGTT
TAACTTCTATGATGGAACCTTTAATTATGGCAATTTTAGGGGTACTCGTAGGCGGTCTGGTAATTGCTATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTTATATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

97.549

100

0.975
  pilC Acinetobacter baylyi ADP1

85.294

100

0.853
  pilC Pseudomonas stutzeri DSM 10701

59.506

99.265

0.591
  pilC Legionella pneumophila strain ERS1305867

52.84

99.265

0.525
  pilG Neisseria gonorrhoeae MS11

47.118

97.794

0.461
  pilG Neisseria meningitidis 44/76-A

47.118

97.794

0.461
  pilC Vibrio cholerae strain A1552

42.402

100

0.424
  pilC Vibrio campbellii strain DS40M4

40.842

99.02

0.404

Multiple sequence alignment