Detailed information NTG0136641

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: RR32_RS20340
• Genome accession: NZ_CP010368
• Coordinates: 3502630..3503490 (+)
• Length: 286 a.a.
• NCBI ID: WP_032047902.1
• Uniprot ID: -
• Organism: Acinetobacter nosocomialis strain 6411
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3497630..3508490

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RR32_RS16415 (RR32_16420)	secG	3498237..3498566 (-)	330	WP_002156913.1	preprotein translocase subunit SecG	-
RR32_RS16420 (RR32_16425)	tpiA	3498579..3499373 (-)	795	WP_032047906.1	triose-phosphate isomerase	-
RR32_RS16425 (RR32_16430)	pilB	3499664..3501376 (+)	1713	WP_004710829.1	type IV-A pilus assembly ATPase PilB	Machinery gene
RR32_RS16430 (RR32_16435)	pilC	3501404..3502630 (+)	1227	WP_039249002.1	type II secretion system F family protein	Machinery gene
RR32_RS20340 (RR32_16440)	pilD	3502630..3503490 (+)	861	WP_032047902.1	prepilin peptidase	Machinery gene
RR32_RS16440 (RR32_16445)	coaE	3503492..3504088 (+)	597	WP_032047901.1	dephospho-CoA kinase	-
RR32_RS16445 (RR32_16450)	-	3504085..3504999 (-)	915	WP_031955876.1	DMT family transporter	-
RR32_RS16450 (RR32_16455)	rlmB	3505035..3505784 (-)	750	WP_004883555.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
RR32_RS16455 (RR32_16460)	-	3505886..3506212 (-)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
RR32_RS16460 (RR32_16465)	-	3506289..3507599 (-)	1311	WP_032047898.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32135.57 Da
• Isoelectric Point: 7.5359

>NTDB_id=136641 RR32_RS20340 WP_032047902.1 3502630..3503490(+) (pilD) [Acinetobacter nosocomialis strain 6411]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPRMMEQDWQQECRMLLNPEQPIIDHEKLTLSKPASSCPACHQP
IRWYQNIPLISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=136641 RR32_RS20340 WP_032047902.1 3502630..3503490(+) (pilD) [Acinetobacter nosocomialis strain 6411]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACACCAAGAATGATGGAGCAAGATTGGCAGCAAGAATGCCGAATGTTACTCA
ATCCTGAGCAACCCATTATTGATCATGAGAAGCTAACTTTAAGTAAGCCTGCTTCATCATGCCCTGCATGCCATCAACCC
ATCCGTTGGTATCAAAATATCCCACTCATAAGCTGGCTAGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCGATTAG
CATTCGCTATCCAGCCATCGAGCTACTTACCATGCTATGTTCATTGGTGGTGGTTATGGTGTTTGGTCCAACTATACAAA
TGCTTTTTGGACTGGTCCTCACATGGGTACTGATAGCACTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACTCTACCTTTAGCTGCGCTTGGTTTAGGCATTAACACCTTTAATATCTACACCTCACCCAACTCGGCCATTTGGGG
TTACCTCATTGGTTTTCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTAATTACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGTGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCGTCTTTA
TTGGGTGCAATCATTGGCATCATCTTATTAAAGTTAAGAAATGACAATCAGCCTTTTGCGTTTGGGCCATATATTGCCAT
TGCAGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	99.65	100	0.997
pilD	Acinetobacter baumannii D1279779	97.902	100	0.979
pilD	Vibrio cholerae strain A1552	53.676	95.105	0.51
pilD	Vibrio campbellii strain DS40M4	52.03	94.755	0.493
pilD	Neisseria gonorrhoeae MS11	47.727	92.308	0.441