Detailed information NTG0136351

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: GBS85147_RS01005
• Genome accession: NZ_CP010319
• Coordinates: 184077..184490 (+)
• Length: 137 a.a.
• NCBI ID: WP_017646959.1
• Uniprot ID: -
• Organism: Streptococcus agalactiae strain GBS85147
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 179077..189490

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GBS85147_RS00985 (GBS85147_0199)	-	181331..181696 (+)	366	WP_000285373.1	DUF1033 family protein	-
GBS85147_RS00990 (GBS85147_0200)	comYA	181868..182839 (+)	972	WP_000250799.1	competence type IV pilus ATPase ComGA	Machinery gene
GBS85147_RS00995 (GBS85147_0201)	comYB	182733..183776 (+)	1044	WP_228322108.1	competence type IV pilus assembly protein ComGB	Machinery gene
GBS85147_RS01000 (GBS85147_0202)	comGC/cglC	183773..184102 (+)	330	WP_000793380.1	competence type IV pilus major pilin ComGC	Machinery gene
GBS85147_RS01005 (GBS85147_0203)	comYD	184077..184490 (+)	414	WP_017646959.1	competence type IV pilus minor pilin ComGD	Machinery gene
GBS85147_RS01010	comGE	184462..184761 (+)	300	WP_025195478.1	competence type IV pilus minor pilin ComGE	-
GBS85147_RS01015 (GBS85147_0204)	comGF	184715..185176 (+)	462	WP_001874060.1	competence type IV pilus minor pilin ComGF	-
GBS85147_RS01020 (GBS85147_0205)	comGG	185154..185525 (+)	372	WP_000601103.1	competence type IV pilus minor pilin ComGG	-
GBS85147_RS01025 (GBS85147_0206)	comYH	185640..186614 (+)	975	WP_001008568.1	class I SAM-dependent methyltransferase	Machinery gene
GBS85147_RS01030 (GBS85147_0207)	-	186646..187839 (+)	1194	WP_000047537.1	acetate kinase	-
GBS85147_RS01035 (GBS85147_0208)	-	187991..188197 (+)	207	WP_000798241.1	helix-turn-helix transcriptional regulator	-
GBS85147_RS09950	-	188256..188393 (+)	138	WP_079263416.1	hypothetical protein	-
GBS85147_RS01040 (GBS85147_0209)	-	188434..188889 (+)	456	WP_053039115.1	hypothetical protein	-

Sequence

Protein

• Length: 137 a.a.
• Molecular weight: 15910.35 Da
• Isoelectric Point: 9.9787

>NTDB_id=136351 GBS85147_RS01005 WP_017646959.1 184077..184490(+) (comYD) [Streptococcus agalactiae strain GBS85147]
MVLRKFQVKAFTVLESLIALSVVAFMTLVFSTSFNNIFRQVEETIFFISFEHLYRDTQKLSAFGQKKQTLTISHNYLENT
YERLYLPKTVKVVKSDTLAFDANGGNSSLAKIQFECYRKTVTYQLYIGSGNYRKKEN

Nucleotide

• Length: 414 bp

>NTDB_id=136351 GBS85147_RS01005 WP_017646959.1 184077..184490(+) (comYD) [Streptococcus agalactiae strain GBS85147]
ATGGTTCTCAGAAAATTTCAAGTTAAAGCATTTACTGTTTTGGAGAGCCTTATTGCATTATCAGTAGTGGCATTTATGAC
GTTAGTATTTTCAACATCATTTAATAATATTTTTAGGCAGGTTGAAGAAACAATTTTCTTCATATCCTTTGAACATCTTT
ATAGAGATACTCAGAAATTGAGTGCATTTGGTCAGAAGAAACAAACCCTTACAATCTCTCATAATTATCTCGAAAATACT
TATGAGAGACTTTATTTACCTAAAACTGTAAAAGTAGTCAAAAGTGACACACTTGCATTTGACGCTAATGGAGGGAATTC
AAGCTTGGCAAAAATTCAATTTGAATGTTATAGAAAAACTGTCACGTATCAATTATATATAGGAAGTGGTAACTATCGTA
AGAAAGAAAATTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	51.515	96.35	0.496
comYD	Streptococcus mutans UA159	51.515	96.35	0.496
comYD	Streptococcus gordonii str. Challis substr. CH1	46.667	98.54	0.46
comGD/cglD	Streptococcus mitis NCTC 12261	40.299	97.81	0.394
comGD/cglD	Streptococcus pneumoniae TIGR4	42.52	92.701	0.394
comGD/cglD	Streptococcus mitis SK321	42.52	92.701	0.394
comGD/cglD	Streptococcus pneumoniae Rx1	41.732	92.701	0.387
comGD/cglD	Streptococcus pneumoniae D39	41.732	92.701	0.387
comGD/cglD	Streptococcus pneumoniae R6	41.732	92.701	0.387