Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | GBS85147_RS01025 | Genome accession | NZ_CP010319 |
| Coordinates | 185640..186614 (+) | Length | 324 a.a. |
| NCBI ID | WP_001008568.1 | Uniprot ID | - |
| Organism | Streptococcus agalactiae strain GBS85147 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 180640..191614
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GBS85147_RS00985 (GBS85147_0199) | - | 181331..181696 (+) | 366 | WP_000285373.1 | DUF1033 family protein | - |
| GBS85147_RS00990 (GBS85147_0200) | comYA | 181868..182839 (+) | 972 | WP_000250799.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| GBS85147_RS00995 (GBS85147_0201) | comYB | 182733..183776 (+) | 1044 | WP_228322108.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| GBS85147_RS01000 (GBS85147_0202) | comGC/cglC | 183773..184102 (+) | 330 | WP_000793380.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| GBS85147_RS01005 (GBS85147_0203) | comYD | 184077..184490 (+) | 414 | WP_017646959.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| GBS85147_RS01010 | comGE | 184462..184761 (+) | 300 | WP_025195478.1 | competence type IV pilus minor pilin ComGE | - |
| GBS85147_RS01015 (GBS85147_0204) | comGF | 184715..185176 (+) | 462 | WP_001874060.1 | competence type IV pilus minor pilin ComGF | - |
| GBS85147_RS01020 (GBS85147_0205) | comGG | 185154..185525 (+) | 372 | WP_000601103.1 | competence type IV pilus minor pilin ComGG | - |
| GBS85147_RS01025 (GBS85147_0206) | comYH | 185640..186614 (+) | 975 | WP_001008568.1 | class I SAM-dependent methyltransferase | Machinery gene |
| GBS85147_RS01030 (GBS85147_0207) | - | 186646..187839 (+) | 1194 | WP_000047537.1 | acetate kinase | - |
| GBS85147_RS01035 (GBS85147_0208) | - | 187991..188197 (+) | 207 | WP_000798241.1 | helix-turn-helix transcriptional regulator | - |
| GBS85147_RS09950 | - | 188256..188393 (+) | 138 | WP_079263416.1 | hypothetical protein | - |
| GBS85147_RS01040 (GBS85147_0209) | - | 188434..188889 (+) | 456 | WP_053039115.1 | hypothetical protein | - |
| GBS85147_RS01045 (GBS85147_0210) | - | 188958..189623 (+) | 666 | WP_000008107.1 | CPBP family intramembrane glutamic endopeptidase | - |
| GBS85147_RS01050 (GBS85147_0211) | proC | 189644..190414 (-) | 771 | WP_001867096.1 | pyrroline-5-carboxylate reductase | - |
| GBS85147_RS01055 (GBS85147_0212) | pepA | 190484..191551 (-) | 1068 | WP_053039116.1 | glutamyl aminopeptidase | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 37200.19 Da Isoelectric Point: 4.4491
>NTDB_id=136352 GBS85147_RS01025 WP_001008568.1 185640..186614(+) (comYH) [Streptococcus agalactiae strain GBS85147]
MNFEKIETAYELILENIQTIENQLKTHIYDALIEQNSYYLGSSCDLDIVVVNNQKLRQLDLSQEEWRRTFQFIFIKSAQT
EQLQANHQFTPDSIGFILLFLLEELTSQETVDVLEIGSGTGNLAQTLLNNSSKELNYMGIEVDDLLIDLSASIAEIIGCS
VQFIQEDAVRPQILKESDVIISDLPVGYYPNDDIAKRYAVSSSKEHTYAHHLLMEQSLKYLKKDGIAIFLAPENLLTSPQ
SDLLKEWLKGYADVIAVLTLPETIFGSRQNAKSIFVLKKQAEQKPETFVYPLTDLQNRENMANFIENFQKWRRENSHYSK
NMIE
MNFEKIETAYELILENIQTIENQLKTHIYDALIEQNSYYLGSSCDLDIVVVNNQKLRQLDLSQEEWRRTFQFIFIKSAQT
EQLQANHQFTPDSIGFILLFLLEELTSQETVDVLEIGSGTGNLAQTLLNNSSKELNYMGIEVDDLLIDLSASIAEIIGCS
VQFIQEDAVRPQILKESDVIISDLPVGYYPNDDIAKRYAVSSSKEHTYAHHLLMEQSLKYLKKDGIAIFLAPENLLTSPQ
SDLLKEWLKGYADVIAVLTLPETIFGSRQNAKSIFVLKKQAEQKPETFVYPLTDLQNRENMANFIENFQKWRRENSHYSK
NMIE
Nucleotide
Download Length: 975 bp
>NTDB_id=136352 GBS85147_RS01025 WP_001008568.1 185640..186614(+) (comYH) [Streptococcus agalactiae strain GBS85147]
ATGAATTTTGAAAAAATTGAGACAGCCTATGAGCTGATTTTAGAAAATATCCAAACGATTGAGAATCAATTAAAAACTCA
TATTTATGATGCCTTAATTGAACAGAACTCTTATTACCTTGGTTCAAGTTGTGATTTAGATATTGTTGTGGTGAATAACC
AAAAATTACGTCAACTTGACTTAAGTCAAGAAGAATGGCGTCGCACTTTCCAGTTCATTTTTATCAAATCTGCGCAAACA
GAGCAATTACAAGCTAATCATCAGTTTACGCCAGATAGTATTGGTTTTATCTTGTTATTTCTTTTGGAAGAATTAACGAG
TCAAGAGACAGTGGATGTCTTGGAAATTGGAAGTGGAACTGGGAATTTAGCTCAGACTCTCCTCAATAACAGCTCGAAAG
AGTTAAATTATATGGGCATTGAAGTTGATGATCTTTTGATTGATCTATCAGCAAGCATTGCTGAAATTATAGGTTGTAGT
GTCCAATTTATCCAAGAGGATGCTGTTAGACCACAAATTTTGAAAGAAAGCGATGTAATCATTAGTGATTTACCAGTTGG
CTATTATCCTAATGATGATATTGCTAAACGATATGCTGTATCAAGTTCTAAAGAGCACACCTATGCTCACCATCTATTGA
TGGAGCAATCTCTTAAATATTTGAAAAAAGATGGAATCGCTATATTTTTAGCACCCGAAAACCTTTTAACAAGTCCACAA
AGTGATTTGCTGAAGGAGTGGTTAAAAGGATATGCAGATGTCATTGCCGTTTTAACTCTACCAGAAACTATTTTTGGAAG
TCGTCAAAATGCGAAATCTATATTTGTTCTCAAGAAGCAAGCAGAACAAAAACCAGAAACCTTTGTATATCCGCTGACAG
ATTTGCAAAATCGTGAGAATATGGCAAACTTCATTGAAAATTTTCAAAAATGGAGAAGAGAAAATAGTCATTACTCAAAA
AATATGATAGAATAG
ATGAATTTTGAAAAAATTGAGACAGCCTATGAGCTGATTTTAGAAAATATCCAAACGATTGAGAATCAATTAAAAACTCA
TATTTATGATGCCTTAATTGAACAGAACTCTTATTACCTTGGTTCAAGTTGTGATTTAGATATTGTTGTGGTGAATAACC
AAAAATTACGTCAACTTGACTTAAGTCAAGAAGAATGGCGTCGCACTTTCCAGTTCATTTTTATCAAATCTGCGCAAACA
GAGCAATTACAAGCTAATCATCAGTTTACGCCAGATAGTATTGGTTTTATCTTGTTATTTCTTTTGGAAGAATTAACGAG
TCAAGAGACAGTGGATGTCTTGGAAATTGGAAGTGGAACTGGGAATTTAGCTCAGACTCTCCTCAATAACAGCTCGAAAG
AGTTAAATTATATGGGCATTGAAGTTGATGATCTTTTGATTGATCTATCAGCAAGCATTGCTGAAATTATAGGTTGTAGT
GTCCAATTTATCCAAGAGGATGCTGTTAGACCACAAATTTTGAAAGAAAGCGATGTAATCATTAGTGATTTACCAGTTGG
CTATTATCCTAATGATGATATTGCTAAACGATATGCTGTATCAAGTTCTAAAGAGCACACCTATGCTCACCATCTATTGA
TGGAGCAATCTCTTAAATATTTGAAAAAAGATGGAATCGCTATATTTTTAGCACCCGAAAACCTTTTAACAAGTCCACAA
AGTGATTTGCTGAAGGAGTGGTTAAAAGGATATGCAGATGTCATTGCCGTTTTAACTCTACCAGAAACTATTTTTGGAAG
TCGTCAAAATGCGAAATCTATATTTGTTCTCAAGAAGCAAGCAGAACAAAAACCAGAAACCTTTGTATATCCGCTGACAG
ATTTGCAAAATCGTGAGAATATGGCAAACTTCATTGAAAATTTTCAAAAATGGAGAAGAGAAAATAGTCATTACTCAAAA
AATATGATAGAATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA159 |
67.302 |
97.222 |
0.654 |
| comYH | Streptococcus mutans UA140 |
67.302 |
97.222 |
0.654 |