Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FORC9_RS02410 Genome accession   NZ_CP009984
Coordinates   484336..485562 (-) Length   408 a.a.
NCBI ID   WP_045618629.1    Uniprot ID   A0AAN1PMC1
Organism   Vibrio vulnificus strain FORC_009     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 479336..490562
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC9_RS02370 (FORC9_0415) rpsP 479509..479757 (+) 249 WP_011079541.1 30S ribosomal protein S16 -
  FORC9_RS02375 (FORC9_0416) rimM 479773..480321 (+) 549 WP_011079542.1 ribosome maturation factor RimM -
  FORC9_RS02380 (FORC9_0417) trmD 480349..481098 (+) 750 WP_011079543.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  FORC9_RS02385 (FORC9_0418) rplS 481140..481493 (+) 354 WP_060530781.1 50S ribosomal protein L19 -
  FORC9_RS02390 yacG 481733..481927 (-) 195 WP_060530783.1 DNA gyrase inhibitor YacG -
  FORC9_RS02395 (FORC9_0419) zapD 481990..482730 (-) 741 WP_011079546.1 cell division protein ZapD -
  FORC9_RS02400 (FORC9_0420) coaE 482763..483371 (-) 609 WP_060530785.1 dephospho-CoA kinase -
  FORC9_RS02405 (FORC9_0421) pilD 483373..484242 (-) 870 WP_013571138.1 prepilin peptidase Machinery gene
  FORC9_RS02410 (FORC9_0422) pilC 484336..485562 (-) 1227 WP_045618629.1 type II secretion system F family protein Machinery gene
  FORC9_RS02415 (FORC9_0423) pilB 485611..487296 (-) 1686 WP_060530787.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FORC9_RS02420 (FORC9_0424) - 487301..487750 (-) 450 WP_175546417.1 pilin -
  FORC9_RS02425 (FORC9_0425) nadC 487973..488860 (-) 888 WP_060530792.1 carboxylating nicotinate-nucleotide diphosphorylase -
  FORC9_RS02430 (FORC9_0426) ampD 488953..489525 (+) 573 WP_060530795.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45253.53 Da        Isoelectric Point: 10.3244

>NTDB_id=133462 FORC9_RS02410 WP_045618629.1 484336..485562(-) (pilC) [Vibrio vulnificus strain FORC_009]
MKLKTHSQIKNYQWKGINGAGKKVSGNTLALTELEVRDKLKMQHIQIKKIKKSSVSVFTRLSHKVKGKDITLLTRQLATM
LTTGVPILQSLKLVADNHRKAEMKSILANVSKAVEAGTPLSKALRSASPQFDGIYVDLVATGEQSGNLDQVFERLAFYRE
KNEQLRAKVIKALIYPCMVVLVALGVSYLMLTQVIPEFRKMFTGFGAELPWFTQKVLDLSDFVQAYSSWFFITLFSAIYL
LRGLSKKSPAFRLKMSRLSLKIPVIGGVLSKAAIAKFSRTLATSFSAGIPILTSLKTTSKTAGNLHYQYAIEDVYRDTAA
GMPMYIAMRNSLAFPELVLQMVMIGEESGQMDDMLNKIATIYEFEVDNTVDNLGKILEPLIIVFLGVVVGGLVTAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=133462 FORC9_RS02410 WP_045618629.1 484336..485562(-) (pilC) [Vibrio vulnificus strain FORC_009]
ATGAAGCTTAAAACCCATTCACAAATCAAAAACTATCAATGGAAAGGGATTAATGGAGCTGGAAAAAAAGTCTCCGGCAA
CACGCTGGCGCTCACCGAGCTTGAAGTGCGTGATAAGCTGAAAATGCAGCATATCCAGATCAAAAAGATCAAGAAATCCA
GTGTGTCAGTCTTTACAAGGTTAAGCCATAAAGTCAAAGGCAAAGACATCACACTGCTTACCCGCCAACTCGCCACCATG
CTGACCACTGGTGTCCCTATTCTCCAATCACTCAAATTGGTTGCTGACAACCATCGCAAAGCCGAGATGAAGTCGATTTT
AGCCAATGTGAGCAAAGCCGTTGAAGCGGGCACGCCGTTATCGAAAGCGCTTCGCAGTGCCAGTCCACAATTCGATGGCA
TTTATGTTGACTTAGTCGCCACTGGTGAACAATCGGGTAATCTTGATCAAGTTTTTGAACGCCTCGCTTTTTATCGGGAA
AAAAATGAGCAGTTGCGAGCAAAAGTGATCAAAGCGCTGATTTATCCCTGCATGGTCGTGCTGGTCGCGTTGGGAGTCTC
TTATTTAATGCTGACTCAGGTTATTCCCGAGTTTCGCAAAATGTTCACCGGATTCGGCGCAGAACTGCCTTGGTTTACGC
AAAAAGTCTTAGACCTGTCTGATTTTGTGCAAGCCTACAGCAGTTGGTTTTTCATTACGTTGTTCAGCGCTATCTATTTA
CTTCGCGGTCTAAGCAAAAAATCACCCGCATTTCGCTTAAAAATGTCACGCTTGAGTTTAAAAATCCCTGTAATTGGCGG
GGTCTTATCCAAAGCGGCGATTGCCAAATTTAGCCGCACATTGGCCACCAGCTTCAGTGCAGGTATCCCGATCCTCACCA
GTTTAAAAACCACCAGTAAAACCGCTGGTAATCTACATTACCAATATGCGATTGAAGATGTTTATCGTGACACCGCAGCC
GGGATGCCAATGTACATCGCCATGCGCAACAGCCTTGCTTTCCCAGAATTGGTGCTGCAAATGGTGATGATTGGTGAAGA
ATCTGGCCAAATGGACGATATGCTGAACAAGATTGCCACCATCTATGAGTTTGAAGTGGATAACACCGTCGACAACCTCG
GTAAAATTCTCGAGCCGTTGATCATCGTCTTTCTTGGCGTTGTCGTCGGCGGATTGGTCACCGCAATGTACTTGCCGATC
TTTAATTTAATGAGTGTTCTGGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

78.5

98.039

0.77
  pilC Vibrio campbellii strain DS40M4

74.813

98.284

0.735
  pilC Pseudomonas stutzeri DSM 10701

41.337

99.02

0.409
  pilG Neisseria gonorrhoeae MS11

41.045

98.529

0.404
  pilG Neisseria meningitidis 44/76-A

40.796

98.529

0.402
  pilC Acinetobacter baumannii D1279779

39.756

100

0.4
  pilC Acinetobacter baylyi ADP1

40.602

97.794

0.397
  pilC Legionella pneumophila strain ERS1305867

40.099

99.02

0.397

Multiple sequence alignment