Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | PN96_RS01345 | Genome accession | NZ_CP009977 |
| Coordinates | 258233..258691 (-) | Length | 152 a.a. |
| NCBI ID | WP_020333947.1 | Uniprot ID | A0AAN0Y3X9 |
| Organism | Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 253233..263691
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PN96_RS01325 (PN96_01295) | coaE | 253741..254355 (-) | 615 | WP_020333951.1 | dephospho-CoA kinase | - |
| PN96_RS01330 (PN96_01300) | pilD | 254356..255225 (-) | 870 | WP_020333950.1 | A24 family peptidase | Machinery gene |
| PN96_RS01335 (PN96_01305) | pilC | 255293..256516 (-) | 1224 | WP_020333949.1 | type II secretion system F family protein | Machinery gene |
| PN96_RS01340 (PN96_01310) | pilB | 256547..258232 (-) | 1686 | WP_020333948.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| PN96_RS01345 (PN96_01315) | pilA | 258233..258691 (-) | 459 | WP_020333947.1 | pilin | Machinery gene |
| PN96_RS01350 (PN96_01320) | nadC | 258958..259845 (-) | 888 | WP_020333946.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| PN96_RS01355 (PN96_01325) | ampD | 259938..260483 (+) | 546 | WP_020333945.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| PN96_RS01360 (PN96_01330) | pdhR | 260893..261660 (+) | 768 | WP_014232947.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
Sequence
Protein
Download Length: 152 a.a. Molecular weight: 15920.27 Da Isoelectric Point: 7.7804
>NTDB_id=133319 PN96_RS01345 WP_020333947.1 258233..258691(-) (pilA) [Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048]
MKSNKQKKQQGFTLIELMIVVAVIGVLAAIAIPQYQNYVKKSALGVGLANITALKTNIEDYIATEGSFPSTTSGTKADFT
RLGTVEDMGDGNVLITPTSDGSLDGTVKFTFDAGVVNTQKIQLVRSGGLWICETTAASEISPKGCAAGSTIK
MKSNKQKKQQGFTLIELMIVVAVIGVLAAIAIPQYQNYVKKSALGVGLANITALKTNIEDYIATEGSFPSTTSGTKADFT
RLGTVEDMGDGNVLITPTSDGSLDGTVKFTFDAGVVNTQKIQLVRSGGLWICETTAASEISPKGCAAGSTIK
Nucleotide
Download Length: 459 bp
>NTDB_id=133319 PN96_RS01345 WP_020333947.1 258233..258691(-) (pilA) [Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048]
ATGAAGTCAAATAAACAGAAAAAACAGCAAGGCTTTACGCTGATTGAATTAATGATCGTGGTGGCGGTAATAGGGGTTTT
GGCAGCAATTGCTATCCCTCAGTACCAAAACTACGTAAAGAAATCAGCTTTAGGAGTAGGCCTAGCAAATATTACTGCTC
TGAAAACTAACATCGAGGATTATATTGCTACTGAAGGTAGCTTTCCTTCAACAACATCAGGTACCAAAGCTGATTTTACG
CGGCTCGGTACCGTAGAAGACATGGGAGATGGCAACGTTCTAATCACCCCTACAAGCGACGGCTCTTTAGATGGAACAGT
AAAATTCACCTTTGATGCAGGTGTCGTCAATACACAAAAGATTCAGTTAGTTCGATCTGGTGGACTTTGGATATGTGAAA
CGACAGCAGCAAGTGAAATATCTCCAAAAGGTTGTGCTGCTGGTTCAACGATTAAATAA
ATGAAGTCAAATAAACAGAAAAAACAGCAAGGCTTTACGCTGATTGAATTAATGATCGTGGTGGCGGTAATAGGGGTTTT
GGCAGCAATTGCTATCCCTCAGTACCAAAACTACGTAAAGAAATCAGCTTTAGGAGTAGGCCTAGCAAATATTACTGCTC
TGAAAACTAACATCGAGGATTATATTGCTACTGAAGGTAGCTTTCCTTCAACAACATCAGGTACCAAAGCTGATTTTACG
CGGCTCGGTACCGTAGAAGACATGGGAGATGGCAACGTTCTAATCACCCCTACAAGCGACGGCTCTTTAGATGGAACAGT
AAAATTCACCTTTGATGCAGGTGTCGTCAATACACAAAAGATTCAGTTAGTTCGATCTGGTGGACTTTGGATATGTGAAA
CGACAGCAGCAAGTGAAATATCTCCAAAAGGTTGTGCTGCTGGTTCAACGATTAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio cholerae strain A1552 |
77.632 |
100 |
0.776 |
| pilA | Vibrio cholerae C6706 |
77.632 |
100 |
0.776 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
77.632 |
100 |
0.776 |
| pilA | Pseudomonas aeruginosa PAK |
43.226 |
100 |
0.441 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
42.568 |
97.368 |
0.414 |
| pilA | Acinetobacter baumannii strain A118 |
40.397 |
99.342 |
0.401 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
39.86 |
94.079 |
0.375 |