Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | PN96_RS01330 | Genome accession | NZ_CP009977 |
| Coordinates | 254356..255225 (-) | Length | 289 a.a. |
| NCBI ID | WP_020333950.1 | Uniprot ID | A0AAN1CWE3 |
| Organism | Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 249356..260225
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PN96_RS01295 (PN96_01265) | rpsP | 250371..250619 (+) | 249 | WP_005379962.1 | 30S ribosomal protein S16 | - |
| PN96_RS01300 (PN96_01270) | rimM | 250650..251198 (+) | 549 | WP_014232958.1 | ribosome maturation factor RimM | - |
| PN96_RS01305 (PN96_01275) | trmD | 251226..251987 (+) | 762 | WP_014232957.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| PN96_RS01310 (PN96_01280) | rplS | 252028..252381 (+) | 354 | WP_005379971.1 | 50S ribosomal protein L19 | - |
| PN96_RS01315 (PN96_01285) | yacG | 252706..252900 (-) | 195 | WP_014232956.1 | DNA gyrase inhibitor YacG | - |
| PN96_RS01320 (PN96_01290) | zapD | 252974..253714 (-) | 741 | WP_020333952.1 | cell division protein ZapD | - |
| PN96_RS01325 (PN96_01295) | coaE | 253741..254355 (-) | 615 | WP_020333951.1 | dephospho-CoA kinase | - |
| PN96_RS01330 (PN96_01300) | pilD | 254356..255225 (-) | 870 | WP_020333950.1 | A24 family peptidase | Machinery gene |
| PN96_RS01335 (PN96_01305) | pilC | 255293..256516 (-) | 1224 | WP_020333949.1 | type II secretion system F family protein | Machinery gene |
| PN96_RS01340 (PN96_01310) | pilB | 256547..258232 (-) | 1686 | WP_020333948.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| PN96_RS01345 (PN96_01315) | pilA | 258233..258691 (-) | 459 | WP_020333947.1 | pilin | Machinery gene |
| PN96_RS01350 (PN96_01320) | nadC | 258958..259845 (-) | 888 | WP_020333946.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
Sequence
Protein
Download Length: 289 a.a. Molecular weight: 32310.38 Da Isoelectric Point: 6.4408
>NTDB_id=133316 PN96_RS01330 WP_020333950.1 254356..255225(-) (pilD) [Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048]
MEVFQYYPWLFVIFAVVFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYNIESPKEVLTLSVPRSSCQQCGTPIRIR
DNIPVISWLLLKGKCHNCSAAISARYPLVEILTAACSGYVAFHFGFSYFTIALIFFTFILIAATFIDLDTMLLPDQLTLP
LTWAGIALALFEVSPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQALPMIILLSSIVGV
IFGIIQLRLQKKGIEKAFPFGPYLAIAGWVSLLWGDQILNWYFTSILGA
MEVFQYYPWLFVIFAVVFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYNIESPKEVLTLSVPRSSCQQCGTPIRIR
DNIPVISWLLLKGKCHNCSAAISARYPLVEILTAACSGYVAFHFGFSYFTIALIFFTFILIAATFIDLDTMLLPDQLTLP
LTWAGIALALFEVSPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQALPMIILLSSIVGV
IFGIIQLRLQKKGIEKAFPFGPYLAIAGWVSLLWGDQILNWYFTSILGA
Nucleotide
Download Length: 870 bp
>NTDB_id=133316 PN96_RS01330 WP_020333950.1 254356..255225(-) (pilD) [Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048]
ATGGAAGTATTTCAGTACTACCCGTGGTTATTCGTTATATTCGCCGTGGTTTTTGGTTTGATCGTGGGAAGTTTTCTCAA
TGTCGTTATCTATCGACTTCCAAAAATCATGGAGCTGGAATGGCGCCGTGAATGTGCTGAGTCTTTTCCTGAATACAATA
TTGAATCACCTAAAGAAGTACTCACATTAAGCGTACCCCGCTCCTCTTGCCAACAATGCGGTACTCCGATTCGCATTCGC
GATAACATTCCAGTGATCAGTTGGCTACTTCTAAAAGGTAAATGCCACAACTGTAGCGCAGCGATCAGCGCCAGATACCC
ACTTGTAGAAATACTGACGGCAGCCTGCTCCGGCTACGTTGCGTTTCATTTTGGATTCAGCTATTTCACTATTGCGCTTA
TATTCTTTACTTTCATTCTGATCGCAGCGACGTTTATCGATCTCGATACCATGCTGCTGCCCGATCAATTAACATTGCCA
TTAACTTGGGCTGGCATTGCTCTAGCATTGTTCGAAGTCAGTCCTGTTAGTCTGCAAGATGCCGTGATCGGTGCAATCGC
TGGCTATTTATGTCTCTGGTCTGTTTATTGGGGCTTTAAATTGCTCACTGGCAAGGAAGGCATGGGCTATGGCGACTTTA
AGCTACTCGCAGCGCTTGGCGCTTGGCTGGGCTGGCAAGCTTTACCAATGATCATTTTGCTTTCTTCTATCGTAGGCGTC
ATATTTGGAATAATTCAGCTACGATTGCAGAAGAAAGGGATCGAAAAGGCCTTCCCTTTCGGTCCTTACTTAGCGATTGC
CGGATGGGTAAGTTTACTCTGGGGTGATCAAATTCTAAATTGGTATTTCACATCAATTCTAGGAGCGTAA
ATGGAAGTATTTCAGTACTACCCGTGGTTATTCGTTATATTCGCCGTGGTTTTTGGTTTGATCGTGGGAAGTTTTCTCAA
TGTCGTTATCTATCGACTTCCAAAAATCATGGAGCTGGAATGGCGCCGTGAATGTGCTGAGTCTTTTCCTGAATACAATA
TTGAATCACCTAAAGAAGTACTCACATTAAGCGTACCCCGCTCCTCTTGCCAACAATGCGGTACTCCGATTCGCATTCGC
GATAACATTCCAGTGATCAGTTGGCTACTTCTAAAAGGTAAATGCCACAACTGTAGCGCAGCGATCAGCGCCAGATACCC
ACTTGTAGAAATACTGACGGCAGCCTGCTCCGGCTACGTTGCGTTTCATTTTGGATTCAGCTATTTCACTATTGCGCTTA
TATTCTTTACTTTCATTCTGATCGCAGCGACGTTTATCGATCTCGATACCATGCTGCTGCCCGATCAATTAACATTGCCA
TTAACTTGGGCTGGCATTGCTCTAGCATTGTTCGAAGTCAGTCCTGTTAGTCTGCAAGATGCCGTGATCGGTGCAATCGC
TGGCTATTTATGTCTCTGGTCTGTTTATTGGGGCTTTAAATTGCTCACTGGCAAGGAAGGCATGGGCTATGGCGACTTTA
AGCTACTCGCAGCGCTTGGCGCTTGGCTGGGCTGGCAAGCTTTACCAATGATCATTTTGCTTTCTTCTATCGTAGGCGTC
ATATTTGGAATAATTCAGCTACGATTGCAGAAGAAAGGGATCGAAAAGGCCTTCCCTTTCGGTCCTTACTTAGCGATTGC
CGGATGGGTAAGTTTACTCTGGGGTGATCAAATTCTAAATTGGTATTTCACATCAATTCTAGGAGCGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio campbellii strain DS40M4 |
88.194 |
99.654 |
0.879 |
| pilD | Vibrio cholerae strain A1552 |
72.569 |
99.654 |
0.723 |
| pilD | Acinetobacter baumannii D1279779 |
53.069 |
95.848 |
0.509 |
| pilD | Acinetobacter nosocomialis M2 |
52.708 |
95.848 |
0.505 |
| pilD | Neisseria gonorrhoeae MS11 |
46.739 |
95.502 |
0.446 |