Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AEI15_RS05610 Genome accession   NZ_CP012214
Coordinates   1065591..1066085 (+) Length   164 a.a.
NCBI ID   WP_002859279.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ088CC52     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1060591..1071085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI15_RS05595 (AEI15_05600) - 1061977..1063155 (-) 1179 WP_002884426.1 metal-dependent hydrolase -
  AEI15_RS05600 (AEI15_05605) gpsA 1063165..1064061 (-) 897 WP_079264017.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  AEI15_RS05605 (AEI15_05610) gatB 1064058..1065476 (-) 1419 WP_002859278.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  AEI15_RS05610 (AEI15_05615) luxS 1065591..1066085 (+) 495 WP_002859279.1 S-ribosylhomocysteine lyase Regulator
  AEI15_RS05615 (AEI15_05620) - 1066397..1067389 (+) 993 WP_002858100.1 isopenicillin N synthase family oxygenase -
  AEI15_RS05620 (AEI15_05625) - 1067400..1068170 (+) 771 WP_002884424.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  AEI15_RS05625 (AEI15_05630) metE 1068182..1070446 (+) 2265 WP_002884422.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18212.25 Da        Isoelectric Point: 7.3250

>NTDB_id=131998 AEI15_RS05610 WP_002859279.1 1065591..1066085(+) (luxS) [Campylobacter jejuni strain CJ088CC52]
MPLLDSFKVDHTKMPAPAVRLAKVMKTPKGDDISVFDLRFCIPNKDIMSEKGTHTLEHLFAGFMRDHLNSNSVEIIDISP
MGCRTGFYMSLIGTPDEKSVAKAWKAAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIMNNKELK
LENA

Nucleotide


Download         Length: 495 bp        

>NTDB_id=131998 AEI15_RS05610 WP_002859279.1 1065591..1066085(+) (luxS) [Campylobacter jejuni strain CJ088CC52]
ATGCCATTATTAGACAGCTTTAAAGTTGACCATACTAAAATGCCAGCTCCTGCTGTGCGTTTAGCTAAAGTTATGAAAAC
ACCTAAGGGTGATGATATTAGCGTGTTTGATTTGCGTTTTTGCATACCAAATAAAGACATTATGAGCGAAAAAGGTACTC
ATACCTTAGAACATTTATTTGCAGGATTTATGAGAGATCATTTAAATTCAAATTCAGTTGAAATTATTGATATTTCACCT
ATGGGTTGTCGCACGGGTTTTTATATGAGTTTAATTGGAACACCAGATGAAAAAAGTGTTGCTAAAGCTTGGAAAGCAGC
TATGAAAGATGTTTTAAGCGTAAGCGATCAAAGCAAAATTCCTGAACTTAATATCTATCAATGCGGAACTTGCGCAATGC
ATTCTTTAGATGAAGCCAAACAAATTGCCCAAAAGGTTTTAAATCTAGGTATTAGCATAATGAATAACAAAGAATTAAAA
CTCGAGAATGCTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.671

98.171

0.713

Multiple sequence alignment