Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FORC6_RS02930 Genome accession   NZ_CP009765
Coordinates   592963..594186 (-) Length   407 a.a.
NCBI ID   WP_025505035.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain FORC_006     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 587963..599186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC6_RS02890 (FORC6_0485) rpsP 587963..588211 (+) 249 WP_005379962.1 30S ribosomal protein S16 -
  FORC6_RS02895 (FORC6_0486) rimM 588240..588788 (+) 549 WP_005462552.1 ribosome maturation factor RimM -
  FORC6_RS02900 (FORC6_0487) trmD 588816..589559 (+) 744 WP_005462562.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  FORC6_RS02905 (FORC6_0488) rplS 589601..589954 (+) 354 WP_005462554.1 50S ribosomal protein L19 -
  FORC6_RS02910 (FORC6_0489) yacG 590383..590577 (-) 195 WP_005462546.1 DNA gyrase inhibitor YacG -
  FORC6_RS02915 (FORC6_0490) zapD 590646..591386 (-) 741 WP_023624252.1 cell division protein ZapD -
  FORC6_RS02920 (FORC6_0491) coaE 591414..592028 (-) 615 WP_060657297.1 dephospho-CoA kinase -
  FORC6_RS02925 (FORC6_0492) pilD 592029..592898 (-) 870 WP_015297252.1 prepilin peptidase Machinery gene
  FORC6_RS02930 (FORC6_0493) pilC 592963..594186 (-) 1224 WP_025505035.1 type II secretion system F family protein Machinery gene
  FORC6_RS02935 (FORC6_0494) pilB 594211..595896 (-) 1686 WP_025613047.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FORC6_RS02940 (FORC6_0495) - 595896..596354 (-) 459 WP_025613046.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  FORC6_RS02945 (FORC6_0496) nadC 596618..597505 (-) 888 WP_015297249.1 carboxylating nicotinate-nucleotide diphosphorylase -
  FORC6_RS02950 (FORC6_0497) ampD 597598..598149 (+) 552 WP_060657299.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 45176.35 Da        Isoelectric Point: 10.3852

>NTDB_id=131998 FORC6_RS02930 WP_025505035.1 592963..594186(-) (pilC) [Vibrio parahaemolyticus strain FORC_006]
MKTTTPQLKNFRWKGVNSSGKKTSGQTLAMSEIEVRERLDAQHIKIKKLKKSSISFLTKLSHRVKGKDITVFTRQISTML
VTGVPLVQALKLVSDNHKKAEMKSILMSVTRAVEAGTPMSKAMRTASNHFDPLYTDLIATGEQSGNLAEVFERLATYREK
NEQLRAKVIKALIYPAMVILVALGVSFIMLTKVIPEFEKMFVGFGAELPWFTRQVLDLSAWTQNWSPFIALGSISVCISA
RVLSKRSDSFRLMLNRSVLKFPVLGAVLSKAAIAKFSRTLATSFTAGIPILTSLKTTSKTSGNMHYQLAIEEVYRDTAAG
MPMYVAMRNCNVFPELVLQMVMIGEESGRLDDMLNKVATIYEFEVDNTVDNLSKILEPLIIVFLGIVVGGLVTAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=131998 FORC6_RS02930 WP_025505035.1 592963..594186(-) (pilC) [Vibrio parahaemolyticus strain FORC_006]
ATGAAAACTACGACACCACAATTAAAGAACTTCCGTTGGAAAGGCGTCAACAGCTCAGGGAAAAAGACCTCTGGTCAAAC
TCTGGCAATGAGCGAAATCGAAGTACGAGAGCGCTTAGATGCCCAGCACATCAAAATCAAAAAGCTAAAGAAAAGCAGCA
TCTCTTTTTTGACCAAACTTAGCCATCGCGTAAAAGGAAAAGACATCACGGTTTTCACTCGTCAAATCTCAACGATGCTA
GTAACCGGTGTGCCGCTAGTACAAGCATTGAAATTGGTCTCTGATAACCACAAAAAAGCGGAAATGAAATCCATTTTGAT
GAGTGTAACTCGGGCTGTTGAAGCGGGTACACCGATGTCCAAAGCGATGCGTACCGCCAGCAACCATTTTGACCCGCTGT
ATACCGACCTGATTGCGACAGGAGAACAATCGGGCAACTTAGCCGAAGTGTTCGAACGCTTAGCTACCTACAGGGAAAAA
AATGAGCAGCTTAGAGCCAAAGTGATCAAGGCTCTAATATATCCAGCCATGGTTATTCTAGTTGCACTGGGAGTATCGTT
TATCATGCTAACCAAGGTCATTCCCGAGTTTGAAAAAATGTTTGTTGGCTTTGGCGCTGAATTGCCATGGTTTACAAGGC
AAGTCTTAGATCTTTCCGCTTGGACACAAAACTGGAGCCCATTTATCGCACTTGGCTCCATCAGTGTATGTATCTCCGCG
AGAGTACTCTCTAAGCGTTCAGATTCTTTTCGCTTAATGCTCAACCGCTCTGTACTTAAGTTTCCAGTCCTTGGGGCAGT
TTTATCGAAAGCCGCTATCGCAAAATTTAGTCGAACACTCGCTACAAGCTTTACGGCGGGCATTCCGATTTTAACCAGTT
TAAAAACCACCTCGAAAACGTCCGGAAATATGCATTATCAATTGGCTATCGAAGAGGTTTATCGCGATACCGCAGCAGGA
ATGCCGATGTATGTTGCAATGCGCAATTGCAACGTGTTCCCTGAGTTGGTGCTGCAAATGGTTATGATAGGCGAAGAATC
CGGCCGACTTGACGATATGCTCAATAAAGTTGCCACAATTTACGAGTTTGAAGTGGACAACACCGTCGATAACCTCAGTA
AAATCTTAGAGCCATTGATTATCGTTTTTTTAGGTATCGTTGTCGGTGGCTTGGTCACAGCAATGTACTTGCCAATCTTT
AACTTAATGAGTGTATTGGGCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

85.995

100

0.86
  pilC Vibrio cholerae strain A1552

74.321

99.509

0.74
  pilC Acinetobacter baylyi ADP1

42.965

97.789

0.42
  pilC Acinetobacter baumannii D1279779

41.25

98.28

0.405
  pilG Neisseria gonorrhoeae MS11

40.247

99.509

0.4
  pilG Neisseria meningitidis 44/76-A

40

99.509

0.398
  pilC Pseudomonas stutzeri DSM 10701

40.909

97.297

0.398
  pilC Legionella pneumophila strain ERS1305867

39.803

100

0.398

Multiple sequence alignment