Detailed information NTG0131997

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: FORC6_RS02925
• Genome accession: NZ_CP009765
• Coordinates: 592029..592898 (-)
• Length: 289 a.a.
• NCBI ID: WP_015297252.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain FORC_006
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 587029..597898

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FORC6_RS02890 (FORC6_0485)	rpsP	587963..588211 (+)	249	WP_005379962.1	30S ribosomal protein S16	-
FORC6_RS02895 (FORC6_0486)	rimM	588240..588788 (+)	549	WP_005462552.1	ribosome maturation factor RimM	-
FORC6_RS02900 (FORC6_0487)	trmD	588816..589559 (+)	744	WP_005462562.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
FORC6_RS02905 (FORC6_0488)	rplS	589601..589954 (+)	354	WP_005462554.1	50S ribosomal protein L19	-
FORC6_RS02910 (FORC6_0489)	yacG	590383..590577 (-)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
FORC6_RS02915 (FORC6_0490)	zapD	590646..591386 (-)	741	WP_023624252.1	cell division protein ZapD	-
FORC6_RS02920 (FORC6_0491)	coaE	591414..592028 (-)	615	WP_060657297.1	dephospho-CoA kinase	-
FORC6_RS02925 (FORC6_0492)	pilD	592029..592898 (-)	870	WP_015297252.1	prepilin peptidase	Machinery gene
FORC6_RS02930 (FORC6_0493)	pilC	592963..594186 (-)	1224	WP_025505035.1	type II secretion system F family protein	Machinery gene
FORC6_RS02935 (FORC6_0494)	pilB	594211..595896 (-)	1686	WP_025613047.1	type IV-A pilus assembly ATPase PilB	Machinery gene
FORC6_RS02940 (FORC6_0495)	-	595896..596354 (-)	459	WP_025613046.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
FORC6_RS02945 (FORC6_0496)	nadC	596618..597505 (-)	888	WP_015297249.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32371.47 Da
• Isoelectric Point: 7.1971

>NTDB_id=131997 FORC6_RS02925 WP_015297252.1 592029..592898(-) (pilD) [Vibrio parahaemolyticus strain FORC_006]
MEVLQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIERAFPFGPYLAIAGWVSLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=131997 FORC6_RS02925 WP_015297252.1 592029..592898(-) (pilD) [Vibrio parahaemolyticus strain FORC_006]
ATGGAAGTGTTGCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTGGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTAAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCTGTAATCAGCTGGCTATTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGCTATCC
GCTGATAGAATTACTCACTGCTGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGGTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTAGTCCAGTTACGACTACAAAAACAAGGTATAGAGAGAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGTGAGCTTAATCTGGGGCGATCAAATTCTAAGTTGGTACTTTACGTCAATTTTAGGGGTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	88.927	100	0.889
pilD	Vibrio cholerae strain A1552	73.264	99.654	0.73
pilD	Acinetobacter baumannii D1279779	52.612	92.734	0.488
pilD	Acinetobacter nosocomialis M2	52.239	92.734	0.484
pilD	Neisseria gonorrhoeae MS11	47.101	95.502	0.45