Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   FORC6_RS01630 Genome accession   NZ_CP009765
Coordinates   337916..339664 (+) Length   582 a.a.
NCBI ID   WP_025612022.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain FORC_006     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 332916..344664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC6_RS01610 (FORC6_0271) pilM 335215..336231 (+) 1017 WP_005496568.1 type IV pilus biogenesis protein PilM Machinery gene
  FORC6_RS01615 (FORC6_0272) pilN 336215..336793 (+) 579 WP_015297396.1 PilN domain-containing protein Machinery gene
  FORC6_RS01620 (FORC6_0273) pilO 336786..337379 (+) 594 WP_005480482.1 type 4a pilus biogenesis protein PilO Machinery gene
  FORC6_RS01625 (FORC6_0274) pilP 337369..337884 (+) 516 WP_060657245.1 pilus assembly protein PilP Machinery gene
  FORC6_RS01630 (FORC6_0275) pilQ 337916..339664 (+) 1749 WP_025612022.1 type IV pilus secretin PilQ Machinery gene
  FORC6_RS01635 (FORC6_0276) aroK 339853..340371 (+) 519 WP_005381319.1 shikimate kinase AroK -
  FORC6_RS01640 (FORC6_0277) aroB 340403..341503 (+) 1101 WP_005496576.1 3-dehydroquinate synthase -
  FORC6_RS01645 (FORC6_0278) - 341556..343073 (+) 1518 WP_060657246.1 SPOR domain-containing protein -
  FORC6_RS01650 (FORC6_0279) - 343143..343982 (+) 840 WP_005486862.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -

Sequence

Protein


Download         Length: 582 a.a.        Molecular weight: 63741.86 Da        Isoelectric Point: 4.4595

>NTDB_id=131987 FORC6_RS01630 WP_025612022.1 337916..339664(+) (pilQ) [Vibrio parahaemolyticus strain FORC_006]
MKMRQGLTRTPRMLTGLFSLWLFLLLAPLAAAEDVQSNALKSIDFRTNKSKDAVIVVELASPAAIVDVKRVQEGLSIDLM
NTSVKDEQLYLLDVKDFATVVESVEVFRDTSTTRLVAYIDEEYTHDYRLTGRYLEITVSKLKPNEKVPDKSILEKEGKLI
SINFQDIPVRNVLQLIADYNQFNLVVSDSVEGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILVAPTDELDLREKQQ
LEKQKLTEEMGELSSEIIKVNFAKASDIAEMINGEGNISMLSERGSMTIDDRTNSLLIRELPENIAVIREIIESLDIPVK
QVQIEARIVTISEGNMDELGIRWGFTSINGNNTVGGSIENNLATIGLYEGGSDGEGEEGGDGVGIDDFLNVNLAATNKSA
ASIAFQVAKLGSDTLLDLELSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLESSSSGATSVAFKKAVLSLKVTPQ
ITPDNRLVLDLSVTQDRPGKVVKTGTGEAMAIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKVPLLGDLPLLGALFR
RSYENVGKSELLIFVTPKVVIQ

Nucleotide


Download         Length: 1749 bp        

>NTDB_id=131987 FORC6_RS01630 WP_025612022.1 337916..339664(+) (pilQ) [Vibrio parahaemolyticus strain FORC_006]
ATGAAAATGAGACAAGGATTAACACGTACACCAAGGATGCTTACTGGGCTCTTCTCCTTATGGTTGTTTTTACTTCTGGC
CCCTTTAGCAGCAGCAGAAGATGTACAGTCTAATGCGCTCAAGAGCATCGACTTTCGCACTAACAAAAGCAAAGATGCCG
TGATTGTGGTGGAGCTTGCATCCCCGGCGGCTATTGTTGATGTTAAACGTGTTCAAGAAGGATTAAGCATTGATTTAATG
AACACGTCGGTAAAAGACGAACAGCTTTACCTTCTCGACGTGAAAGATTTCGCGACGGTGGTGGAAAGTGTGGAAGTGTT
CCGCGATACCTCCACCACACGATTAGTTGCGTATATCGATGAAGAATACACGCATGACTATCGTTTGACGGGGCGTTATC
TTGAAATCACTGTCAGCAAGCTTAAACCAAATGAAAAAGTGCCAGACAAGAGCATCTTAGAAAAAGAAGGCAAGCTGATC
TCGATTAACTTCCAAGACATTCCTGTGCGTAACGTTTTGCAGCTGATTGCAGATTACAACCAGTTTAACTTGGTGGTTTC
GGACTCTGTCGAAGGCAACCTTACACTGCGTCTTGATGGTGTGCCGTGGCAGCAAGTGCTCGACATCATCTTGCAAGTGA
AAGGGTTAGATAAGCGTGTTGATGGCAACGTGATTTTGGTCGCCCCGACCGATGAGCTGGATTTGCGCGAGAAGCAGCAG
TTAGAAAAACAAAAGCTGACGGAAGAAATGGGTGAACTTTCATCAGAAATAATCAAAGTCAATTTTGCTAAAGCTTCGGA
TATTGCAGAGATGATTAATGGTGAAGGCAACATTAGCATGTTGTCAGAGCGTGGCAGTATGACCATTGATGATCGAACCA
ATTCGCTATTAATCAGAGAATTGCCAGAGAACATCGCCGTTATTCGCGAAATCATTGAATCGCTCGATATCCCAGTCAAA
CAAGTACAAATTGAAGCCCGAATTGTCACCATCAGTGAGGGTAACATGGATGAGTTAGGTATTCGTTGGGGCTTCACTTC
TATTAATGGTAACAACACCGTTGGTGGTTCTATTGAGAACAACCTTGCGACAATCGGCTTGTACGAAGGTGGTAGTGACG
GCGAAGGTGAAGAGGGGGGTGATGGTGTTGGTATCGATGATTTCCTTAATGTGAACTTAGCTGCAACTAATAAAAGTGCT
GCAAGCATTGCGTTCCAAGTGGCAAAGTTAGGTTCTGATACATTATTGGACTTAGAGCTGTCTGCATTACAGCAAGAATC
AAAAGCAGAAATCATTTCGAGCCCACGATTGATCACGACCAATAAGAAGCCTGCGTACATTGAACAAGGTACCGAAATTC
CTTATCTAGAATCTTCATCGAGTGGTGCAACGTCAGTGGCCTTTAAAAAAGCGGTGTTGAGCTTGAAGGTGACACCGCAG
ATCACACCTGACAATCGTTTGGTGTTGGATCTGAGTGTGACCCAAGACCGGCCTGGTAAGGTAGTGAAAACGGGCACAGG
AGAGGCAATGGCAATTGATACGCAGCGCATTGGCACCCAAGTTCTGGTTAATAATGGTGAGACGGTTGTGCTCGGTGGTA
TTTTCCAGCACAGCATTACTAACTCAGTGGATAAAGTGCCATTGTTGGGCGATCTTCCGCTATTAGGCGCACTTTTCCGC
CGAAGTTACGAAAACGTTGGTAAAAGTGAGTTGCTAATTTTCGTTACGCCTAAGGTCGTTATTCAGTAG

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(256-321)

Bacterial type II and III secretion system protein (Secretin)

(422-580)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio campbellii strain DS40M4

91.065

100

0.911
  pilQ Vibrio cholerae strain A1552

76.232

97.595

0.744
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

76.232

97.595

0.744
  pilQ Pseudomonas aeruginosa PAK

38.879

100

0.393
  pilQ Legionella pneumophila strain ERS1305867

41.273

94.502

0.39
  pilQ Legionella pneumophila strain Lp02

41.273

94.502

0.39
  pilQ Acinetobacter baumannii D1279779

37.793

100

0.388
  pilQ Acinetobacter baumannii strain A118

37.793

100

0.388
  comQ Acinetobacter baylyi ADP1

38.25

100

0.383

Multiple sequence alignment