Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   IX92_RS14155 Genome accession   NZ_CP009617
Coordinates   3046174..3047538 (-) Length   454 a.a.
NCBI ID   WP_080748871.1    Uniprot ID   -
Organism   Vibrio coralliilyticus strain RE98     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3041174..3052538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IX92_RS14135 (IX92_14135) - 3041918..3042745 (-) 828 WP_006957149.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  IX92_RS14140 (IX92_14140) - 3042815..3044317 (-) 1503 WP_043009396.1 AAA family ATPase -
  IX92_RS14145 (IX92_14145) aroB 3044359..3045447 (-) 1089 WP_021458026.1 3-dehydroquinate synthase -
  IX92_RS14150 (IX92_14150) aroK 3045479..3045997 (-) 519 WP_006957155.1 shikimate kinase AroK -
  IX92_RS14155 (IX92_14155) pilQ 3046174..3047538 (-) 1365 WP_080748871.1 type IV pilus secretin PilQ family protein Machinery gene
  IX92_RS14160 (IX92_14160) - 3047551..3048063 (-) 513 WP_043009397.1 pilus assembly protein PilP -
  IX92_RS14165 (IX92_14165) pilO 3048053..3048643 (-) 591 WP_043009398.1 type 4a pilus biogenesis protein PilO -
  IX92_RS14170 (IX92_14170) - 3048636..3049193 (-) 558 WP_043009399.1 PilN domain-containing protein -
  IX92_RS14175 (IX92_14175) pilM 3049183..3050100 (-) 918 WP_006957161.1 pilus assembly protein PilM -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49315.53 Da        Isoelectric Point: 4.7606

>NTDB_id=130789 IX92_RS14155 WP_080748871.1 3046174..3047538(-) (pilQ) [Vibrio coralliilyticus strain RE98]
MVFKKARLLGVLLFSLVITLNAASSEEMKHELEIEGKVSDKLSVNFQDIPVRQVLQQIADYNDFNLVVSDAVSGNLTLRV
KEVPWPQLLDIILRMKGLEKRMDGSVLLVATAAEIAQFRQQKLEQEKVTAELQPLESEIIAVRFAKAADIAALLSDSAAT
RMLSERGAISIDTRTNSLLIRDIAINIQAMKTIITALDVPVKQVQIEARIVSLNEGDLQELGVRWGFSSTNGSHSVGGSI
ENNLANLNLYGDSDSSLDDFLNVNLAATSVNASTIAFQVAKLGSDTLLDLELSALQRESRAEVISSPRLITTNKQPAYIE
QGTEIPYLEAASSGATSVNFKKAVLSLKVTPQITSDNRLILDLNVTQDRPGQVVKTGTGEAVAIDTQRIGTQVLVNNGET
IVLGGIYQHSVSDTVDQVPLLGDIPLLGALFRRTYQQMGKSELLIFVTPKVVTP

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=130789 IX92_RS14155 WP_080748871.1 3046174..3047538(-) (pilQ) [Vibrio coralliilyticus strain RE98]
ATGGTTTTTAAGAAAGCAAGGTTGCTCGGTGTGCTGCTGTTTAGTTTGGTGATTACGCTTAATGCTGCAAGCAGTGAGGA
GATGAAGCATGAACTTGAGATAGAGGGAAAGGTGTCAGACAAGCTTTCCGTCAATTTTCAGGATATTCCGGTGCGCCAGG
TATTGCAGCAGATTGCGGATTACAACGATTTTAATCTGGTTGTGTCAGATGCCGTGTCTGGCAATCTGACCCTAAGAGTG
AAGGAGGTTCCGTGGCCACAGTTACTCGATATCATTTTGCGTATGAAGGGATTAGAGAAGCGCATGGATGGCAGTGTGTT
GCTGGTGGCAACGGCGGCTGAAATTGCTCAGTTCAGACAACAAAAGTTGGAACAGGAGAAAGTCACGGCTGAGCTTCAAC
CGTTAGAATCTGAGATTATCGCTGTGAGGTTTGCCAAAGCGGCAGATATTGCGGCATTACTGAGCGATAGCGCTGCGACG
CGGATGTTGTCTGAACGAGGGGCGATTTCGATCGATACTCGAACCAATAGCCTGTTAATTCGCGATATTGCCATCAATAT
TCAAGCGATGAAGACGATCATTACGGCATTAGATGTGCCGGTGAAACAAGTGCAAATTGAGGCGCGCATAGTCAGCTTGA
ATGAAGGTGATTTACAGGAGTTGGGTGTGCGTTGGGGGTTCAGTTCGACCAACGGCAGTCATAGTGTGGGAGGCTCGATA
GAAAATAACTTAGCCAATCTCAATCTATATGGGGATTCGGACTCGTCACTGGACGATTTTCTCAACGTCAACTTAGCGGC
GACGTCCGTGAATGCCTCGACGATTGCTTTTCAGGTCGCCAAGCTGGGCAGTGACACTTTACTGGATTTAGAACTGTCAG
CGTTACAAAGAGAATCGAGGGCGGAAGTCATATCCAGCCCGCGTCTGATTACGACTAACAAGCAACCTGCTTACATTGAG
CAGGGTACTGAAATTCCTTATTTAGAGGCAGCATCAAGCGGTGCAACCAGCGTGAATTTTAAAAAAGCAGTGCTAAGTTT
AAAAGTCACCCCGCAAATCACATCGGATAACCGTTTGATTCTCGATCTGAATGTCACCCAAGATAGGCCGGGTCAAGTGG
TCAAAACCGGCACTGGGGAAGCTGTTGCGATAGACACACAACGTATCGGTACTCAGGTGCTGGTCAATAATGGCGAAACC
ATTGTTCTGGGAGGGATTTATCAGCACAGTGTTTCGGATACGGTCGATCAGGTGCCGTTGTTAGGCGACATTCCTTTGCT
AGGTGCGCTTTTTCGACGAACTTATCAGCAAATGGGTAAGAGCGAGTTGTTGATTTTTGTAACGCCAAAAGTGGTTACGC
CTTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(138-203)

Bacterial type II and III secretion system protein (Secretin)

(294-452)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio campbellii strain DS40M4

69.163

100

0.692
  pilQ Vibrio cholerae strain A1552

69.213

98.018

0.678
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

69.213

98.018

0.678
  pilQ Legionella pneumophila strain Lp02

45.538

96.256

0.438
  pilQ Legionella pneumophila strain ERS1305867

45.538

96.256

0.438
  pilQ Pseudomonas aeruginosa PAK

43.852

94.934

0.416
  comQ Acinetobacter baylyi ADP1

42.664

97.577

0.416
  pilQ Acinetobacter baumannii D1279779

37.422

100

0.396
  pilQ Acinetobacter baumannii strain A118

37.422

100

0.396
  comE Haemophilus influenzae 86-028NP

42.365

89.427

0.379
  comE Haemophilus influenzae Rd KW20

41.007

91.85

0.377

Multiple sequence alignment