Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   LA59_RS00820 Genome accession   NZ_CP009467
Coordinates   166329..167438 (-) Length   369 a.a.
NCBI ID   WP_069686721.1    Uniprot ID   -
Organism   Vibrio harveyi strain ATCC 33843 (392 [MAV])     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 161329..172438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA59_RS00790 (LA59_00785) hemF 161858..162775 (-) 918 WP_009702131.1 oxygen-dependent coproporphyrinogen oxidase -
  LA59_RS00795 (LA59_00790) - 162810..163367 (-) 558 WP_017190968.1 L-threonylcarbamoyladenylate synthase -
  LA59_RS00800 (LA59_00795) purE 163567..164052 (+) 486 WP_005440742.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  LA59_RS00805 (LA59_00800) - 164057..165190 (+) 1134 WP_069686720.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  LA59_RS00810 (LA59_00805) - 165254..165823 (-) 570 WP_005450974.1 type I DNA topoisomerase -
  LA59_RS00815 (LA59_00810) - 165847..166326 (-) 480 WP_005429833.1 DUF494 family protein -
  LA59_RS00820 (LA59_00815) dprA 166329..167438 (-) 1110 WP_069686721.1 DNA-processing protein DprA Machinery gene
  LA59_RS00825 (LA59_00820) - 167422..168516 (-) 1095 WP_069686722.1 LysM peptidoglycan-binding domain-containing protein -
  LA59_RS00830 (LA59_00825) def 168655..169173 (+) 519 WP_005450979.1 peptide deformylase -
  LA59_RS00835 (LA59_00830) fmt 169207..170154 (+) 948 WP_009701851.1 methionyl-tRNA formyltransferase -
  LA59_RS00840 (LA59_00835) rsmB 170236..171519 (+) 1284 WP_005450981.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39736.47 Da        Isoelectric Point: 6.0412

>NTDB_id=129571 LA59_RS00820 WP_069686721.1 166329..167438(-) (dprA) [Vibrio harveyi strain ATCC 33843 (392 [MAV])]
MKLRNDTDLAAWLKLSCLPGIGGVKMNKLLSKDTPSNIVGYSTEQLQLLGFTTKQLQAWSEVDKEVDACLTWASASSHHH
IVTLADTLYPPLLKQTVAPPPLLFIKGEASCLSQPQIAMVGSRNASVDGLQHARQFAADLVKHDLIVTSGLALGIDGHAH
DGALQADGKTIAVLGSGLEQVYPARHRGLARRVMENGALVSEFRPDAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGSL
ITARYALEQDREVFAIPASINAPNASGGNQLIRNGACLVQNTQEVLNEIQSLLDWSINQSLDLFSTPIDEEELPFPLLLA
NVGNEATPVDILASRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=129571 LA59_RS00820 WP_069686721.1 166329..167438(-) (dprA) [Vibrio harveyi strain ATCC 33843 (392 [MAV])]
ATGAAACTACGCAATGATACTGACCTCGCCGCCTGGTTAAAGCTGAGCTGTTTGCCAGGCATTGGCGGGGTGAAGATGAA
TAAGCTGCTGAGTAAAGATACGCCAAGCAATATTGTCGGATACTCAACTGAGCAGCTTCAGCTTTTGGGTTTTACCACGA
AGCAACTGCAAGCATGGTCTGAGGTCGATAAAGAAGTCGACGCTTGTCTTACTTGGGCTAGCGCCTCATCTCATCATCAT
ATTGTTACTTTGGCGGATACTCTGTATCCCCCACTTCTCAAACAAACGGTCGCTCCACCTCCTTTACTATTTATAAAGGG
AGAAGCGAGTTGTTTGTCTCAACCTCAAATTGCCATGGTCGGCAGCCGTAATGCTAGTGTTGATGGGCTTCAACACGCAC
GTCAGTTCGCTGCAGATTTGGTGAAACATGATCTGATTGTTACCAGTGGTTTGGCTTTGGGTATCGATGGACACGCTCAT
GATGGTGCTTTGCAAGCGGACGGTAAAACCATTGCGGTATTGGGTTCAGGGTTAGAGCAAGTTTATCCAGCCCGTCACCG
AGGTTTAGCGCGGCGAGTGATGGAAAACGGTGCGTTAGTCTCTGAGTTTCGCCCAGATGCAAAACCTCGAGCAGAAAACT
TCCCACGACGTAATCGAATCATTAGTGGTTTGTCGCTTGGCGTGTTGGTTGTCGAAGCAGCAGAAAAGAGTGGCTCATTA
ATCACCGCTCGCTACGCTCTTGAGCAAGACCGTGAAGTTTTCGCTATACCAGCTTCGATTAATGCTCCCAATGCCAGCGG
TGGTAATCAGTTGATTCGTAATGGGGCTTGTCTCGTACAAAACACTCAAGAGGTGTTGAATGAAATACAGTCTTTGCTCG
ACTGGTCTATTAATCAGAGCTTGGATTTATTTTCTACGCCAATTGATGAAGAAGAATTGCCATTTCCTCTGCTGTTAGCT
AACGTAGGAAATGAGGCTACACCAGTTGATATTCTTGCAAGCAGGACCAATATACCTGTCCAAGAAGTCATGATGCAGCT
CTTAGAGCTTGAGCTTTCAGGGCATGTTGTTGCAGTATCCGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(78-280)

DprA winged helix domain (DprA_WH)

(318-362)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

92.683

100

0.927
  dprA Vibrio cholerae strain A1552

58.649

100

0.588
  dprA Glaesserella parasuis strain SC1401

46.667

100

0.474
  dprA Haemophilus influenzae Rd KW20

44.706

92.141

0.412
  dprA Legionella pneumophila strain ERS1305867

49.324

80.217

0.396
  dprA Neisseria meningitidis strain C311

37.018

100

0.39
  dprA Neisseria meningitidis MC58

37.018

100

0.39
  dprA Neisseria gonorrhoeae MS11

35.659

100

0.374
  dprA Neisseria gonorrhoeae strain FA1090

35.401

100

0.371

Multiple sequence alignment