Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | PSA3335_RS08085 | Genome accession | NZ_CP008742 |
| Coordinates | 1638691..1639908 (-) | Length | 405 a.a. |
| NCBI ID | WP_002552023.1 | Uniprot ID | A0A554GP56 |
| Organism | Pseudomonas savastanoi pv. savastanoi NCPPB 3335 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1633691..1644908
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PSA3335_RS08070 (PSA3335_07495) | yacG | 1636991..1637200 (-) | 210 | WP_002552020.1 | DNA gyrase inhibitor YacG | - |
| PSA3335_RS08075 (PSA3335_07500) | coaE | 1637197..1637820 (-) | 624 | WP_002552021.1 | dephospho-CoA kinase | - |
| PSA3335_RS08080 (PSA3335_07505) | pilD | 1637817..1638689 (-) | 873 | WP_002552022.1 | prepilin peptidase | Machinery gene |
| PSA3335_RS08085 (PSA3335_07510) | pilC | 1638691..1639908 (-) | 1218 | WP_002552023.1 | type II secretion system F family protein | Machinery gene |
| PSA3335_RS08090 (PSA3335_07515) | pilB | 1639911..1641605 (-) | 1695 | WP_031597287.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| PSA3335_RS08095 | - | 1641831..1642226 (+) | 396 | WP_031597289.1 | pilin | - |
| PSA3335_RS08100 (PSA3335_07520) | - | 1642387..1643691 (+) | 1305 | WP_057425986.1 | O-antigen ligase family protein | - |
| PSA3335_RS29950 | - | 1643849..1644004 (+) | 156 | Protein_1490 | polysaccharide export protein | - |
Sequence
Protein
Download Length: 405 a.a. Molecular weight: 44200.15 Da Isoelectric Point: 10.1599
>NTDB_id=123983 PSA3335_RS08085 WP_002552023.1 1638691..1639908(-) (pilC) [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
MASKAVKVSIYTWEGVDKKGGKLSGEVSGHNLALVKAQLRKQGINFTKVRKKPVSIFGKGKKIKPLDIAFFSRQMATMMK
AGVPLLQSFDIIAEGAENPNMRALVGSLKQEVSAGNSFATALRKKPEYFDDLFCNLVDAGEQAGALESLLDRVASYKEKT
ERLKAKIKKAMTYPTAVLIVAFIVSGILLIKVVPQFQSVFAGFNAELPAFTLMVIALSEVVQQWWLAIVALFPVSFFMFK
RAYKQSQKFRDSLDRFLLKVPIIGPLIFKSSVARYARTLATTFAAGVPLVEALDSVAGATGNVVFRNAVNQVKQDVSTGM
QLNFSMRSTGVFPSLAIQMTAIGEESGALDAMLDKVATYYEEEVDNMVDNMTSLMEPMIMAILGVIVGGLVIAMYLPIFK
LGSVV
MASKAVKVSIYTWEGVDKKGGKLSGEVSGHNLALVKAQLRKQGINFTKVRKKPVSIFGKGKKIKPLDIAFFSRQMATMMK
AGVPLLQSFDIIAEGAENPNMRALVGSLKQEVSAGNSFATALRKKPEYFDDLFCNLVDAGEQAGALESLLDRVASYKEKT
ERLKAKIKKAMTYPTAVLIVAFIVSGILLIKVVPQFQSVFAGFNAELPAFTLMVIALSEVVQQWWLAIVALFPVSFFMFK
RAYKQSQKFRDSLDRFLLKVPIIGPLIFKSSVARYARTLATTFAAGVPLVEALDSVAGATGNVVFRNAVNQVKQDVSTGM
QLNFSMRSTGVFPSLAIQMTAIGEESGALDAMLDKVATYYEEEVDNMVDNMTSLMEPMIMAILGVIVGGLVIAMYLPIFK
LGSVV
Nucleotide
Download Length: 1218 bp
>NTDB_id=123983 PSA3335_RS08085 WP_002552023.1 1638691..1639908(-) (pilC) [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
ATGGCCAGCAAGGCAGTTAAAGTCAGTATTTACACATGGGAAGGTGTGGACAAGAAAGGCGGCAAACTCAGTGGAGAAGT
GAGCGGGCACAACCTCGCGCTCGTGAAGGCTCAGTTACGCAAACAAGGAATCAATTTCACCAAAGTACGTAAAAAGCCCG
TATCGATTTTTGGCAAAGGTAAGAAGATCAAGCCGCTGGACATCGCGTTCTTTTCCCGGCAGATGGCTACCATGATGAAG
GCAGGCGTGCCGCTGCTGCAGTCATTTGACATCATTGCCGAAGGTGCAGAAAACCCGAACATGCGTGCGCTGGTCGGCTC
TCTAAAGCAGGAGGTTTCAGCAGGGAACAGCTTTGCGACGGCTCTGCGAAAGAAACCGGAATACTTCGACGACCTGTTCT
GCAACCTAGTCGATGCCGGAGAGCAAGCGGGGGCGCTCGAAAGCCTGCTGGACCGCGTGGCGAGCTACAAGGAAAAGACG
GAAAGGCTAAAGGCCAAAATCAAGAAGGCGATGACTTATCCTACCGCCGTATTAATTGTCGCCTTTATTGTGTCAGGTAT
TTTGCTGATTAAAGTTGTGCCGCAGTTCCAGTCTGTTTTCGCAGGCTTTAACGCAGAATTACCAGCGTTCACGCTGATGG
TCATCGCCCTTTCAGAAGTCGTTCAACAGTGGTGGCTGGCAATAGTTGCGTTATTTCCTGTCAGTTTTTTCATGTTCAAG
CGGGCTTACAAACAGTCTCAAAAGTTTCGTGACAGCCTCGACCGCTTTCTTCTGAAAGTCCCCATTATCGGACCACTGAT
TTTCAAGTCGTCCGTCGCGCGCTATGCGCGGACCCTTGCGACAACCTTTGCCGCAGGTGTCCCGCTGGTGGAGGCACTTG
ACTCGGTCGCCGGCGCCACCGGTAACGTCGTATTCAGGAACGCAGTCAACCAGGTCAAACAGGATGTCTCCACGGGTATG
CAATTGAATTTCTCGATGCGTTCAACGGGTGTATTTCCAAGTCTGGCGATACAAATGACAGCAATCGGCGAAGAGTCCGG
TGCGCTTGATGCCATGCTCGATAAAGTCGCGACCTACTATGAAGAAGAAGTCGACAACATGGTCGACAATATGACCAGCC
TGATGGAACCGATGATCATGGCGATACTGGGTGTCATCGTCGGCGGCCTGGTTATTGCCATGTACCTCCCCATCTTCAAA
CTCGGAAGCGTTGTCTGA
ATGGCCAGCAAGGCAGTTAAAGTCAGTATTTACACATGGGAAGGTGTGGACAAGAAAGGCGGCAAACTCAGTGGAGAAGT
GAGCGGGCACAACCTCGCGCTCGTGAAGGCTCAGTTACGCAAACAAGGAATCAATTTCACCAAAGTACGTAAAAAGCCCG
TATCGATTTTTGGCAAAGGTAAGAAGATCAAGCCGCTGGACATCGCGTTCTTTTCCCGGCAGATGGCTACCATGATGAAG
GCAGGCGTGCCGCTGCTGCAGTCATTTGACATCATTGCCGAAGGTGCAGAAAACCCGAACATGCGTGCGCTGGTCGGCTC
TCTAAAGCAGGAGGTTTCAGCAGGGAACAGCTTTGCGACGGCTCTGCGAAAGAAACCGGAATACTTCGACGACCTGTTCT
GCAACCTAGTCGATGCCGGAGAGCAAGCGGGGGCGCTCGAAAGCCTGCTGGACCGCGTGGCGAGCTACAAGGAAAAGACG
GAAAGGCTAAAGGCCAAAATCAAGAAGGCGATGACTTATCCTACCGCCGTATTAATTGTCGCCTTTATTGTGTCAGGTAT
TTTGCTGATTAAAGTTGTGCCGCAGTTCCAGTCTGTTTTCGCAGGCTTTAACGCAGAATTACCAGCGTTCACGCTGATGG
TCATCGCCCTTTCAGAAGTCGTTCAACAGTGGTGGCTGGCAATAGTTGCGTTATTTCCTGTCAGTTTTTTCATGTTCAAG
CGGGCTTACAAACAGTCTCAAAAGTTTCGTGACAGCCTCGACCGCTTTCTTCTGAAAGTCCCCATTATCGGACCACTGAT
TTTCAAGTCGTCCGTCGCGCGCTATGCGCGGACCCTTGCGACAACCTTTGCCGCAGGTGTCCCGCTGGTGGAGGCACTTG
ACTCGGTCGCCGGCGCCACCGGTAACGTCGTATTCAGGAACGCAGTCAACCAGGTCAAACAGGATGTCTCCACGGGTATG
CAATTGAATTTCTCGATGCGTTCAACGGGTGTATTTCCAAGTCTGGCGATACAAATGACAGCAATCGGCGAAGAGTCCGG
TGCGCTTGATGCCATGCTCGATAAAGTCGCGACCTACTATGAAGAAGAAGTCGACAACATGGTCGACAATATGACCAGCC
TGATGGAACCGATGATCATGGCGATACTGGGTGTCATCGTCGGCGGCCTGGTTATTGCCATGTACCTCCCCATCTTCAAA
CTCGGAAGCGTTGTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
73.333 |
100 |
0.733 |
| pilC | Acinetobacter baylyi ADP1 |
59.314 |
100 |
0.598 |
| pilC | Acinetobacter baumannii D1279779 |
59.158 |
99.753 |
0.59 |
| pilC | Legionella pneumophila strain ERS1305867 |
52.778 |
97.778 |
0.516 |
| pilG | Neisseria meningitidis 44/76-A |
42.432 |
99.506 |
0.422 |
| pilG | Neisseria gonorrhoeae MS11 |
42.432 |
99.506 |
0.422 |
| pilC | Vibrio campbellii strain DS40M4 |
41.463 |
100 |
0.42 |
| pilC | Vibrio cholerae strain A1552 |
41.481 |
100 |
0.415 |
| pilC | Thermus thermophilus HB27 |
37.811 |
99.259 |
0.375 |