Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYA   Type   Machinery gene
Locus tag   DK41_RS01150 Genome accession   NZ_CP007570
Coordinates   203176..204147 (+) Length   323 a.a.
NCBI ID   WP_000250798.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain GBS1-NY     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 198176..209147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK41_RS01135 (DK41_01150) - 199216..199581 (+) 366 WP_000285374.1 DUF1033 family protein -
  DK41_RS01140 (DK41_01155) ltrA 200272..201549 (+) 1278 WP_001292556.1 group II intron reverse transcriptase/maturase -
  DK41_RS01145 (DK41_01160) - 201599..203011 (-) 1413 WP_017771557.1 IS1182 family transposase -
  DK41_RS01150 (DK41_01165) comYA 203176..204147 (+) 972 WP_000250798.1 competence type IV pilus ATPase ComGA Machinery gene
  DK41_RS01155 (DK41_01170) comYB 204041..205084 (+) 1044 WP_223297804.1 competence type IV pilus assembly protein ComGB Machinery gene
  DK41_RS01160 (DK41_01175) comGF 205081..205536 (+) 456 WP_000793378.1 competence type IV pilus minor pilin ComGF -
  DK41_RS01165 (DK41_01180) comGG 205514..205885 (+) 372 WP_000601101.1 competence type IV pilus minor pilin ComGG -
  DK41_RS01170 (DK41_01185) comYH 206000..206974 (+) 975 WP_001008569.1 class I SAM-dependent methyltransferase Machinery gene
  DK41_RS01175 (DK41_01190) - 207006..208199 (+) 1194 WP_000047534.1 acetate kinase -
  DK41_RS01180 - 208327..208519 (+) 193 Protein_181 helix-turn-helix transcriptional regulator -
  DK41_RS11175 - 208498..208764 (+) 267 Protein_182 hypothetical protein -

Sequence

Protein


Download         Length: 323 a.a.        Molecular weight: 36768.25 Da        Isoelectric Point: 6.9167

>NTDB_id=121035 DK41_RS01150 WP_000250798.1 203176..204147(+) (comYA) [Streptococcus agalactiae strain GBS1-NY]
MVQSLAKHVIHQAVEVNAQDIYIIPKGDCYELYMRIDDERRFIDVFEFNRMASLISHFKFVAGMNVGEKRRSQLGSCDYE
LSEGRLVSLRLSSVGDYRGQESLVIRILYSGHQDLKYWFDNIKQMKEVLGARGLYLFSGPVGSGKTTLMYQLASEVFKNK
QIITIEDPVEIKNDKMLQLQLNEDIGMTYDALIKLSLRHRPDILIIGEIRDQATARAVIRASLTGVMVFSTIHAKSIPGV
YDRLIELGVNYQELENSLKLIAYQRLIGGGSLIDFETGNFKKHSSDKWNRQVDILAEEGHISKKQAQVEKIIPQETTESS
PTF

Nucleotide


Download         Length: 972 bp        

>NTDB_id=121035 DK41_RS01150 WP_000250798.1 203176..204147(+) (comYA) [Streptococcus agalactiae strain GBS1-NY]
ATGGTTCAATCATTAGCAAAGCACGTCATCCATCAGGCAGTAGAAGTAAATGCTCAAGATATTTATATCATTCCCAAAGG
TGATTGTTATGAACTCTATATGCGTATTGATGATGAAAGGCGGTTTATTGATGTTTTTGAGTTTAATAGGATGGCTAGTC
TTATTAGTCACTTTAAATTTGTGGCAGGCATGAACGTTGGAGAAAAAAGACGAAGTCAATTAGGTTCTTGTGACTATGAA
CTGTCAGAGGGAAGACTGGTTTCATTACGACTATCAAGTGTGGGAGATTATCGTGGTCAAGAATCTTTAGTTATTCGTAT
TTTGTATTCAGGTCATCAGGACTTAAAATATTGGTTTGATAATATAAAGCAAATGAAGGAAGTACTGGGTGCAAGAGGGC
TATATCTTTTTTCCGGCCCTGTGGGGAGTGGTAAAACAACTCTCATGTATCAATTAGCTTCAGAAGTATTTAAAAATAAG
CAAATTATCACGATTGAAGATCCGGTAGAAATCAAGAATGACAAGATGTTACAACTCCAATTGAATGAGGATATTGGAAT
GACTTATGATGCTTTAATCAAACTGTCTTTACGGCATCGTCCAGATATTTTAATTATCGGAGAGATTAGAGATCAAGCGA
CGGCCCGTGCTGTTATTCGTGCAAGTTTAACGGGAGTGATGGTTTTTTCTACTATTCATGCTAAAAGTATTCCCGGAGTC
TATGATAGGCTTATAGAATTAGGGGTTAACTATCAAGAGTTAGAAAATAGTCTAAAATTAATAGCATATCAACGTTTAAT
TGGAGGAGGAAGCCTAATTGACTTTGAGACAGGTAATTTTAAAAAACACTCATCAGACAAGTGGAATAGACAAGTGGATA
TCTTGGCTGAAGAAGGACATATCAGTAAGAAACAGGCACAAGTCGAAAAAATTATCCCTCAAGAAACAACGGAAAGTAGT
CCAACTTTTTAA

Domains

Predicted by InterProScan.

Type II/IV secretion system protein (T2SSE)

(9-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYA Streptococcus mutans UA159

68.81

96.285

0.663
  comYA Streptococcus mutans UA140

68.81

96.285

0.663
  comYA Streptococcus gordonii str. Challis substr. CH1

63.636

98.762

0.628
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

62.701

96.285

0.604
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

61.736

96.285

0.594
  comGA/cglA/cilD Streptococcus pneumoniae D39

61.736

96.285

0.594
  comGA/cglA/cilD Streptococcus pneumoniae R6

61.736

96.285

0.594
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

61.736

96.285

0.594
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

61.935

95.975

0.594
  comGA Lactococcus lactis subsp. cremoris KW2

50.621

99.69

0.505

Multiple sequence alignment