Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   DK41_RS01155 Genome accession   NZ_CP007570
Coordinates   204041..205084 (+) Length   347 a.a.
NCBI ID   WP_223297804.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain GBS1-NY     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 199041..210084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK41_RS01135 (DK41_01150) - 199216..199581 (+) 366 WP_000285374.1 DUF1033 family protein -
  DK41_RS01140 (DK41_01155) ltrA 200272..201549 (+) 1278 WP_001292556.1 group II intron reverse transcriptase/maturase -
  DK41_RS01145 (DK41_01160) - 201599..203011 (-) 1413 WP_017771557.1 IS1182 family transposase -
  DK41_RS01150 (DK41_01165) comYA 203176..204147 (+) 972 WP_000250798.1 competence type IV pilus ATPase ComGA Machinery gene
  DK41_RS01155 (DK41_01170) comYB 204041..205084 (+) 1044 WP_223297804.1 competence type IV pilus assembly protein ComGB Machinery gene
  DK41_RS01160 (DK41_01175) comGF 205081..205536 (+) 456 WP_000793378.1 competence type IV pilus minor pilin ComGF -
  DK41_RS01165 (DK41_01180) comGG 205514..205885 (+) 372 WP_000601101.1 competence type IV pilus minor pilin ComGG -
  DK41_RS01170 (DK41_01185) comYH 206000..206974 (+) 975 WP_001008569.1 class I SAM-dependent methyltransferase Machinery gene
  DK41_RS01175 (DK41_01190) - 207006..208199 (+) 1194 WP_000047534.1 acetate kinase -
  DK41_RS01180 - 208327..208519 (+) 193 Protein_181 helix-turn-helix transcriptional regulator -
  DK41_RS11175 - 208498..208764 (+) 267 Protein_182 hypothetical protein -
  DK41_RS01185 (DK41_01200) - 208833..209498 (+) 666 WP_000008108.1 type II CAAX endopeptidase family protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 40014.77 Da        Isoelectric Point: 9.9642

>NTDB_id=121036 DK41_RS01155 WP_223297804.1 204041..205084(+) (comYB) [Streptococcus agalactiae strain GBS1-NY]
MDKWISWLKKDISVRNRHKSKKLSLKKQRKVVQLFNNLFASGFSLTDMVTFLKRSKLLSDCYTDRMNKALLEGKDLSKML
GELGFSDTVITQVALADLHGNISRSLLKIESYLANLLLVRKKVIEVATYPLILLSFLVLIMIGLRHYLMPQLGENNFATR
LITNVPNIFLLLLAVVLIFSLIFYIIQKRLSRIKVACFLTTIPLVGSYVKLYLTAYYAREWGNLLSQGVELDQIVKVMQN
QKSKLFREIGYDMEEGFLSGKAFHQKVLDYPFFLTELSLMIEYGQVKAKLGTELDIYADEKWEDFFTKLARATQLIQPVI
FIFVALIIVMIYAAMLLPMYQNMEILS

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=121036 DK41_RS01155 WP_223297804.1 204041..205084(+) (comYB) [Streptococcus agalactiae strain GBS1-NY]
ATAGACAAGTGGATATCTTGGCTGAAGAAGGACATATCAGTAAGAAACAGGCACAAGTCGAAAAAATTATCCCTCAAGAA
ACAACGGAAAGTAGTCCAACTTTTTAATAATCTTTTTGCTAGTGGTTTTTCTTTAACTGATATGGTCACCTTCTTAAAGA
GGAGTAAGTTATTGTCTGATTGTTATACAGATAGGATGAATAAGGCATTATTAGAGGGAAAAGATTTATCAAAAATGTTA
GGAGAGTTAGGTTTTTCTGACACTGTTATCACACAGGTTGCATTAGCTGATTTGCATGGTAACATTTCAAGGAGCCTACT
AAAGATTGAGTCTTATTTAGCTAATCTTTTGTTAGTTAGAAAAAAAGTAATAGAAGTAGCTACTTACCCATTGATATTAT
TGTCTTTTCTGGTGCTAATTATGATTGGCCTTAGGCATTATTTAATGCCCCAATTAGGAGAAAATAATTTTGCAACTAGA
CTGATTACAAATGTGCCGAATATTTTCTTATTACTTTTAGCAGTTGTACTTATTTTTAGTTTAATATTTTATATTATTCA
AAAGCGATTGTCGCGCATTAAAGTAGCTTGTTTTTTAACAACAATTCCCTTAGTTGGATCATATGTTAAGCTTTATTTAA
CTGCTTACTATGCCCGTGAGTGGGGAAATTTATTAAGTCAAGGTGTTGAATTGGACCAAATTGTTAAAGTAATGCAAAAT
CAGAAATCCAAACTTTTTAGGGAAATAGGATATGACATGGAAGAAGGTTTTCTATCAGGTAAAGCATTTCACCAAAAAGT
ATTAGACTATCCGTTTTTCTTAACTGAGCTTAGTTTAATGATTGAATATGGTCAAGTTAAGGCGAAATTAGGAACAGAGT
TAGATATATATGCTGATGAGAAGTGGGAGGATTTTTTTACAAAATTAGCTAGAGCGACCCAGTTAATCCAACCTGTTATT
TTTATTTTTGTAGCTCTTATCATTGTTATGATTTATGCAGCAATGCTGTTACCAATGTATCAAAATATGGAGATATTATC
ATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(218-338)

Type II secretion system (T2SS), protein F (T2SSF)

(33-150)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus mutans UA140

62.17

98.271

0.611
  comYB Streptococcus mutans UA159

61.877

98.271

0.608
  comYB Streptococcus gordonii str. Challis substr. CH1

56.012

98.271

0.55
  comGB/cglB Streptococcus mitis NCTC 12261

54.925

96.542

0.53
  comGB/cglB Streptococcus mitis SK321

54.328

96.542

0.524
  comGB/cglB Streptococcus pneumoniae Rx1

53.433

96.542

0.516
  comGB/cglB Streptococcus pneumoniae D39

53.433

96.542

0.516
  comGB/cglB Streptococcus pneumoniae R6

53.433

96.542

0.516
  comGB/cglB Streptococcus pneumoniae TIGR4

53.433

96.542

0.516
  comGB Lactococcus lactis subsp. cremoris KW2

50.148

97.118

0.487

Multiple sequence alignment