Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   B224_RS00440 Genome accession   NZ_CP007567
Coordinates   83830..85071 (-) Length   413 a.a.
NCBI ID   WP_041204905.1    Uniprot ID   -
Organism   Aeromonas media WS     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 78830..90071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B224_RS00415 (B224_0106) mutT 80800..81204 (+) 405 WP_005332118.1 8-oxo-dGTP diphosphatase MutT -
  B224_RS00420 (B224_0107) yacG 81280..81474 (-) 195 WP_005332119.1 DNA gyrase inhibitor YacG -
  B224_RS00425 (B224_0108) zapD 81484..82206 (-) 723 WP_005332120.1 cell division protein ZapD -
  B224_RS00430 (B224_0109) coaE 82244..82858 (-) 615 WP_005332121.1 dephospho-CoA kinase -
  B224_RS00435 (B224_0111) pilD 82877..83749 (-) 873 WP_005332122.1 prepilin peptidase Machinery gene
  B224_RS00440 (B224_0112) pilC 83830..85071 (-) 1242 WP_041204905.1 type II secretion system F family protein Machinery gene
  B224_RS00445 (B224_0113) pilB 85201..86886 (-) 1686 WP_041204906.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  B224_RS23890 - 86927..87340 (-) 414 WP_081805615.1 hypothetical protein -
  B224_RS00455 (B224_0114) - 87386..88522 (-) 1137 WP_041204891.1 ISAs1-like element ISAeme1 family transposase -
  B224_RS00460 (B224_0116) nadC 88967..89830 (-) 864 WP_005329217.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45563.62 Da        Isoelectric Point: 10.1600

>NTDB_id=121001 B224_RS00440 WP_041204905.1 83830..85071(-) (pilC) [Aeromonas media WS]
MATLAQKRNTPKKVFSFRWHGFNRRGQKVSGEFQADSINTVKAELRKQGVNVTKVSKQGQGLFSKGGARIKPMDIAVISR
QITTMLSAGVPLVQSLQIIARGHEKAAVRELIGQIATDVETGTPLSEALRRHPRHFDALYCDLVDAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPAMVILVAIIVTSILLLFVIPQFEEIFKSFGAELPVFTRFVIGISRFMQAWWYIIFGGTA
LAIFLYVRAWRKSQKVRDNTDRFILTIPVVGNILHKAAMARFARTLSTTFSAGIPLVDALVSAAGASGNYVYRTAILAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVAAIFEQEVDDMVDGLTSLLEPIIMVVLGVLVGGMVVA
MYLPIFKLGSVIH

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=121001 B224_RS00440 WP_041204905.1 83830..85071(-) (pilC) [Aeromonas media WS]
ATGGCAACATTAGCGCAAAAACGTAACACACCCAAAAAGGTCTTTTCCTTCCGCTGGCATGGATTCAATCGCAGGGGACA
AAAGGTTTCCGGTGAGTTCCAGGCCGACAGCATCAACACCGTCAAGGCGGAGCTGCGCAAGCAGGGCGTCAATGTCACCA
AGGTCAGCAAGCAAGGCCAGGGCCTGTTTTCCAAGGGTGGTGCCCGGATCAAACCGATGGACATCGCCGTCATCTCCCGC
CAGATCACCACCATGCTCTCGGCCGGTGTGCCGCTGGTGCAAAGCCTGCAGATCATCGCCCGCGGTCATGAGAAGGCAGC
AGTACGCGAACTCATCGGCCAGATCGCCACCGATGTGGAAACCGGCACCCCGCTGTCAGAGGCGCTGCGCCGCCATCCCC
GCCACTTCGATGCGCTTTACTGCGATCTGGTAGACGCGGGGGAGCAGTCCGGCGCGCTGGAAACCATCTACGACCGGATT
GCCACATACCGCGAGAAGAGTGAGGCGCTGAAGTCCAAGATCAAGAAGGCCATGTTCTATCCAGCCATGGTCATCCTGGT
CGCCATCATCGTGACCTCCATCCTGCTGCTGTTCGTCATTCCCCAGTTCGAGGAGATCTTCAAGAGCTTCGGGGCAGAGC
TGCCAGTCTTCACCCGATTCGTCATCGGTATCTCCCGCTTCATGCAAGCTTGGTGGTATATCATCTTTGGTGGCACTGCC
TTGGCCATCTTCCTCTATGTGCGCGCCTGGCGAAAATCCCAGAAGGTGCGGGACAACACCGACAGATTCATCCTCACCAT
TCCGGTCGTGGGCAACATATTGCACAAGGCGGCCATGGCCCGCTTCGCCCGTACCCTCTCCACCACCTTCTCCGCCGGGA
TACCTCTGGTGGATGCTCTGGTGTCAGCGGCCGGCGCCTCTGGCAACTATGTCTATCGCACGGCCATCCTGGCCATTCGC
AACGAGGTGGTGGCCGGCATGCAGATCAACGTCGCCATGCGTACCGTGGATCTCTTCCCAGACATGGTGATCCAGATGGT
GATGATTGGTGAAGAGTCAGGCGCCATCGATGACATGCTCTCCAAGGTTGCCGCCATCTTCGAGCAGGAGGTGGACGACA
TGGTCGATGGCCTCACCAGCCTGCTCGAACCCATCATCATGGTGGTGCTCGGGGTGCTGGTCGGTGGCATGGTCGTCGCC
ATGTACCTCCCCATCTTCAAGCTGGGCTCTGTGATACACTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.818

95.884

0.545
  pilC Legionella pneumophila strain ERS1305867

53.086

98.063

0.521
  pilC Acinetobacter baumannii D1279779

50.873

97.094

0.494
  pilC Acinetobacter baylyi ADP1

50.378

96.126

0.484
  pilC Vibrio cholerae strain A1552

48

96.852

0.465
  pilC Vibrio campbellii strain DS40M4

46.482

96.368

0.448
  pilG Neisseria gonorrhoeae MS11

40.05

97.337

0.39
  pilG Neisseria meningitidis 44/76-A

39.801

97.337

0.387
  pilC Thermus thermophilus HB27

39

96.852

0.378

Multiple sequence alignment