Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   CL52_RS15825 Genome accession   NZ_CP007511
Coordinates   3422702..3423922 (-) Length   406 a.a.
NCBI ID   WP_043221697.1    Uniprot ID   -
Organism   Stutzerimonas balearica DSM 6083 strain DSM6083 (=SP1402)     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3417702..3428922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CL52_RS15795 (CL52_16055) petA 3418184..3418777 (-) 594 WP_041104007.1 ubiquinol-cytochrome c reductase iron-sulfur subunit -
  CL52_RS15800 (CL52_16060) rpsI 3419031..3419423 (-) 393 WP_043221690.1 30S ribosomal protein S9 -
  CL52_RS15805 (CL52_16065) rplM 3419438..3419866 (-) 429 WP_041104003.1 50S ribosomal protein L13 -
  CL52_RS15810 (CL52_16070) - 3420233..3420943 (+) 711 WP_043221692.1 energy-coupling factor ABC transporter permease -
  CL52_RS20860 yacG 3420937..3421134 (-) 198 WP_074519929.1 DNA gyrase inhibitor YacG -
  CL52_RS15815 (CL52_16075) coaE 3421131..3421739 (-) 609 WP_043221694.1 dephospho-CoA kinase -
  CL52_RS15820 (CL52_16080) pilD 3421833..3422702 (-) 870 WP_043221695.1 A24 family peptidase Machinery gene
  CL52_RS15825 (CL52_16085) pilC 3422702..3423922 (-) 1221 WP_043221697.1 type II secretion system F family protein Machinery gene
  CL52_RS15830 (CL52_16090) pilB 3423925..3425631 (-) 1707 WP_043221699.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CL52_RS15835 (CL52_16095) - 3425950..3426435 (+) 486 WP_043221701.1 pilin -
  CL52_RS21150 (CL52_16100) - 3426630..3426781 (+) 152 Protein_3186 IS4 family transposase -
  CL52_RS15845 (CL52_16105) cysN 3426977..3428875 (-) 1899 WP_043221703.1 sulfate adenylyltransferase subunit CysN -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44082.86 Da        Isoelectric Point: 9.8506

>NTDB_id=120181 CL52_RS15825 WP_043221697.1 3422702..3423922(-) (pilC) [Stutzerimonas balearica DSM 6083 strain DSM6083 (=SP1402)]
MAQQKAIRTSVFTWEGTDRKGSKVKGELSGASPALVKAQLRKQGINPLKVRKKSVSLFGAGKKIKPMDIALFTRQMATMM
KAGVPLLQSFDIIGEGFDNPNMRKLVDELKQEVAAGNSFAASLRKKPQYFDDLYCNLVDSGEQSGALETLLDRVATYKEK
TEALKAKIKKAMNYPIAVIVVAVIVSAILLIKVVPQFQEVFANFGADLPAFTLMVIGLSELLQEWWLIVLLALGGTAYLL
GSMHKRSEKFRNWVDRSVLKLPIVGDIIYKSSVARFARTLSTTFAAGVPLVDALDSVAGATGNVVFRNATMKVKGDVSSG
MQLNFSMRTTGAFPTMAVQMTAIGEESGSLDEMLGKVATFYEDEVDNMVDGLTSLMEPMIMAVLGVLVGGLIIAMYLPIF
QLGSVV

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=120181 CL52_RS15825 WP_043221697.1 3422702..3423922(-) (pilC) [Stutzerimonas balearica DSM 6083 strain DSM6083 (=SP1402)]
ATGGCGCAGCAGAAAGCGATCCGTACCAGTGTCTTTACCTGGGAAGGAACCGACAGAAAGGGCTCCAAGGTCAAGGGTGA
GCTCAGTGGTGCGAGCCCTGCGCTGGTCAAGGCCCAACTGCGCAAGCAGGGCATCAATCCGCTGAAGGTGCGCAAGAAGT
CGGTATCGCTGTTCGGGGCCGGCAAAAAGATCAAACCGATGGACATTGCGCTGTTCACTCGGCAGATGGCGACCATGATG
AAGGCCGGCGTGCCGCTCTTGCAGTCGTTCGACATCATCGGTGAAGGCTTCGACAATCCGAACATGCGCAAGCTGGTGGA
CGAGTTGAAGCAGGAGGTCGCAGCCGGCAACAGCTTTGCCGCGTCGCTGCGCAAGAAACCTCAATACTTCGATGATCTTT
ACTGCAACCTCGTGGATTCGGGGGAGCAGTCAGGTGCTTTGGAGACCTTGCTCGATAGGGTTGCCACGTACAAGGAAAAA
ACCGAAGCACTGAAGGCAAAGATCAAGAAAGCGATGAACTATCCCATCGCGGTGATCGTGGTCGCCGTGATCGTTTCTGC
CATTTTGCTGATCAAGGTTGTCCCGCAGTTCCAGGAGGTATTTGCCAACTTTGGTGCGGATCTCCCCGCGTTCACACTGA
TGGTGATCGGATTGTCGGAATTGCTGCAGGAGTGGTGGCTGATTGTGCTGCTAGCGCTCGGCGGCACTGCATATCTGTTG
GGCAGCATGCACAAGCGCTCCGAGAAATTCCGCAATTGGGTGGACCGCTCGGTACTCAAGCTGCCAATCGTGGGCGACAT
CATCTACAAATCTTCCGTGGCGCGATTTGCCCGCACGCTCTCGACGACCTTCGCCGCTGGCGTGCCATTGGTGGATGCGC
TGGATTCCGTTGCGGGTGCTACGGGCAATGTGGTGTTTCGCAACGCAACGATGAAGGTCAAGGGGGATGTGTCCAGTGGT
ATGCAGCTCAACTTTTCCATGCGTACCACCGGGGCTTTCCCGACGATGGCGGTCCAGATGACGGCCATTGGTGAGGAGTC
GGGTTCGCTCGATGAAATGTTGGGAAAGGTGGCTACGTTTTATGAGGATGAGGTCGACAACATGGTTGATGGTCTCACCA
GTCTGATGGAGCCAATGATCATGGCTGTGCTCGGTGTTCTGGTGGGCGGCCTGATCATTGCGATGTATCTGCCGATCTTC
CAGTTGGGTTCCGTAGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

87.841

99.261

0.872
  pilC Acinetobacter baylyi ADP1

60.784

100

0.611
  pilC Acinetobacter baumannii D1279779

60.294

100

0.606
  pilC Legionella pneumophila strain ERS1305867

53.788

97.537

0.525
  pilG Neisseria meningitidis 44/76-A

45.707

97.537

0.446
  pilG Neisseria gonorrhoeae MS11

45.707

97.537

0.446
  pilC Vibrio cholerae strain A1552

42.677

97.537

0.416
  pilC Vibrio campbellii strain DS40M4

40.909

97.537

0.399

Multiple sequence alignment