Detailed information
Bioinformatically predicted
Overview
| Name | pilB | Type | Machinery gene |
| Locus tag | CL52_RS15830 | Genome accession | NZ_CP007511 |
| Coordinates | 3423925..3425631 (-) | Length | 568 a.a. |
| NCBI ID | WP_043221699.1 | Uniprot ID | A0A8D3Y3I6 |
| Organism | Stutzerimonas balearica DSM 6083 strain DSM6083 (=SP1402) | ||
| Function | power the assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| IS/Tn | 3426630..3426719 | 3423925..3425631 | flank | 999 |
Gene organization within MGE regions
Location: 3423925..3426719
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CL52_RS15830 (CL52_16090) | pilB | 3423925..3425631 (-) | 1707 | WP_043221699.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| CL52_RS15835 (CL52_16095) | - | 3425950..3426435 (+) | 486 | WP_043221701.1 | pilin | - |
Sequence
Protein
Download Length: 568 a.a. Molecular weight: 61711.72 Da Isoelectric Point: 5.7926
>NTDB_id=120182 CL52_RS15830 WP_043221699.1 3423925..3425631(-) (pilB) [Stutzerimonas balearica DSM 6083 strain DSM6083 (=SP1402)]
MSEHVPLSGLARQMVMAGLLDEKTAQQAQTQALRNKTPLVTYVVENRLAGGRVVAELASDQFGVALLDLSALDRASLPAD
LLAEKLARQHRALALAKRGNKLFVALSDPGNHQAITDIQFSTGLSVESVLVEDDKLGKWIEQVYESTSSGLGDLGDIDLD
GVDVEAGGDDQGAAGESGEAADDAPVVRFVNKMLLDAIKGGSSDLHFEPYEKAYRVRFRTDGILHEVARPPIQLAPRLSA
RLKVMAGLDISERRKPQDGRIKMKLSKTKAIDFRVNTLPTLWGEKIVMRILDPTSAQMGIDALGYEPEQKELYLAALSQP
QGMILVTGPTGSGKTVSLYTGLNILNTVDVNISTAEDPVEINLEGINQVNVNPRQGMDFAQALRAFLRQDPDVIMVGEIR
DLETAEIAIKAAQTGHMVMSTLHTNSAAETLTRLRNMGVPAFNIATSVNLIIAQRLARKLCPSCKKAVDIPREALLREGF
PEQAIGTFKIYGPVGCDNCKGGYKGRVGIYEVVKNTPALQRIIMEDGNSLDISKQMRKDGFNDLRTSALFKAMQGVTSLE
EVNRVTKD
MSEHVPLSGLARQMVMAGLLDEKTAQQAQTQALRNKTPLVTYVVENRLAGGRVVAELASDQFGVALLDLSALDRASLPAD
LLAEKLARQHRALALAKRGNKLFVALSDPGNHQAITDIQFSTGLSVESVLVEDDKLGKWIEQVYESTSSGLGDLGDIDLD
GVDVEAGGDDQGAAGESGEAADDAPVVRFVNKMLLDAIKGGSSDLHFEPYEKAYRVRFRTDGILHEVARPPIQLAPRLSA
RLKVMAGLDISERRKPQDGRIKMKLSKTKAIDFRVNTLPTLWGEKIVMRILDPTSAQMGIDALGYEPEQKELYLAALSQP
QGMILVTGPTGSGKTVSLYTGLNILNTVDVNISTAEDPVEINLEGINQVNVNPRQGMDFAQALRAFLRQDPDVIMVGEIR
DLETAEIAIKAAQTGHMVMSTLHTNSAAETLTRLRNMGVPAFNIATSVNLIIAQRLARKLCPSCKKAVDIPREALLREGF
PEQAIGTFKIYGPVGCDNCKGGYKGRVGIYEVVKNTPALQRIIMEDGNSLDISKQMRKDGFNDLRTSALFKAMQGVTSLE
EVNRVTKD
Nucleotide
Download Length: 1707 bp
>NTDB_id=120182 CL52_RS15830 WP_043221699.1 3423925..3425631(-) (pilB) [Stutzerimonas balearica DSM 6083 strain DSM6083 (=SP1402)]
ATGAGCGAGCATGTTCCCCTTTCCGGACTGGCCAGGCAGATGGTGATGGCCGGCCTGCTGGATGAGAAGACAGCGCAGCA
AGCGCAGACGCAGGCGCTGCGCAACAAGACACCCCTGGTCACTTATGTGGTGGAGAACCGCCTGGCAGGCGGGCGGGTCG
TGGCCGAGCTGGCATCCGATCAGTTCGGCGTCGCATTGCTCGATCTCTCGGCGCTGGACAGGGCCTCGCTGCCCGCCGAC
CTGCTGGCCGAAAAACTGGCGCGGCAACACCGCGCCCTAGCCTTGGCCAAGCGTGGCAACAAGCTGTTCGTCGCGCTTTC
CGATCCGGGCAACCATCAGGCGATCACCGACATCCAGTTCAGCACGGGGCTCAGTGTCGAGTCGGTACTGGTCGAGGATG
ACAAGCTGGGCAAGTGGATCGAGCAGGTCTACGAGTCCACCTCCTCGGGATTGGGTGATCTTGGCGATATCGATCTTGAC
GGGGTCGATGTGGAGGCTGGCGGCGACGACCAGGGCGCTGCCGGGGAATCGGGCGAGGCCGCCGACGATGCGCCGGTGGT
GCGTTTCGTCAACAAGATGCTGCTCGATGCCATCAAGGGGGGCTCTTCGGACCTGCACTTCGAACCCTATGAAAAGGCCT
ACCGGGTTCGCTTTCGTACCGACGGAATCCTGCATGAGGTGGCGCGGCCGCCGATCCAGTTGGCGCCACGCCTGTCGGCG
CGCCTCAAGGTCATGGCCGGGCTGGATATTTCCGAACGGCGCAAGCCGCAGGACGGCCGCATCAAGATGAAGCTGTCCAA
GACCAAGGCCATCGACTTCCGTGTCAACACTTTGCCGACGCTCTGGGGCGAGAAGATCGTGATGCGGATCCTCGATCCGA
CCAGTGCGCAGATGGGCATCGATGCGCTGGGCTACGAGCCCGAGCAGAAGGAGCTGTATCTCGCTGCGTTGAGCCAACCG
CAGGGCATGATCCTGGTAACCGGGCCGACCGGCTCGGGCAAGACCGTATCGCTTTACACCGGCCTCAACATCCTCAATAC
CGTGGATGTGAACATTTCCACAGCCGAGGATCCGGTCGAGATCAATCTCGAGGGTATCAACCAAGTCAACGTCAACCCGC
GCCAGGGCATGGACTTCGCGCAGGCCCTGCGCGCCTTCCTGCGCCAGGATCCGGATGTGATCATGGTCGGCGAGATCCGC
GATCTTGAAACGGCCGAGATCGCCATCAAGGCAGCGCAGACCGGCCATATGGTGATGTCGACCCTGCACACCAACAGCGC
TGCGGAAACCCTGACACGCCTGCGCAACATGGGCGTCCCGGCGTTCAATATCGCGACGTCGGTCAACCTGATCATCGCCC
AGCGACTGGCGCGGAAGCTTTGCCCGAGCTGCAAGAAGGCTGTCGATATCCCGCGCGAGGCCCTGCTGCGCGAAGGCTTC
CCGGAACAGGCGATCGGGACATTCAAGATCTACGGGCCGGTGGGTTGCGATAACTGCAAGGGCGGCTACAAGGGCCGCGT
CGGTATTTATGAAGTGGTTAAAAACACGCCGGCATTGCAGCGCATTATCATGGAAGACGGCAACTCCCTGGATATCTCCA
AGCAGATGCGCAAGGACGGCTTCAATGACCTGCGCACCTCGGCCCTGTTCAAGGCCATGCAAGGCGTGACCAGCCTCGAA
GAAGTCAACCGGGTCACCAAGGATTAA
ATGAGCGAGCATGTTCCCCTTTCCGGACTGGCCAGGCAGATGGTGATGGCCGGCCTGCTGGATGAGAAGACAGCGCAGCA
AGCGCAGACGCAGGCGCTGCGCAACAAGACACCCCTGGTCACTTATGTGGTGGAGAACCGCCTGGCAGGCGGGCGGGTCG
TGGCCGAGCTGGCATCCGATCAGTTCGGCGTCGCATTGCTCGATCTCTCGGCGCTGGACAGGGCCTCGCTGCCCGCCGAC
CTGCTGGCCGAAAAACTGGCGCGGCAACACCGCGCCCTAGCCTTGGCCAAGCGTGGCAACAAGCTGTTCGTCGCGCTTTC
CGATCCGGGCAACCATCAGGCGATCACCGACATCCAGTTCAGCACGGGGCTCAGTGTCGAGTCGGTACTGGTCGAGGATG
ACAAGCTGGGCAAGTGGATCGAGCAGGTCTACGAGTCCACCTCCTCGGGATTGGGTGATCTTGGCGATATCGATCTTGAC
GGGGTCGATGTGGAGGCTGGCGGCGACGACCAGGGCGCTGCCGGGGAATCGGGCGAGGCCGCCGACGATGCGCCGGTGGT
GCGTTTCGTCAACAAGATGCTGCTCGATGCCATCAAGGGGGGCTCTTCGGACCTGCACTTCGAACCCTATGAAAAGGCCT
ACCGGGTTCGCTTTCGTACCGACGGAATCCTGCATGAGGTGGCGCGGCCGCCGATCCAGTTGGCGCCACGCCTGTCGGCG
CGCCTCAAGGTCATGGCCGGGCTGGATATTTCCGAACGGCGCAAGCCGCAGGACGGCCGCATCAAGATGAAGCTGTCCAA
GACCAAGGCCATCGACTTCCGTGTCAACACTTTGCCGACGCTCTGGGGCGAGAAGATCGTGATGCGGATCCTCGATCCGA
CCAGTGCGCAGATGGGCATCGATGCGCTGGGCTACGAGCCCGAGCAGAAGGAGCTGTATCTCGCTGCGTTGAGCCAACCG
CAGGGCATGATCCTGGTAACCGGGCCGACCGGCTCGGGCAAGACCGTATCGCTTTACACCGGCCTCAACATCCTCAATAC
CGTGGATGTGAACATTTCCACAGCCGAGGATCCGGTCGAGATCAATCTCGAGGGTATCAACCAAGTCAACGTCAACCCGC
GCCAGGGCATGGACTTCGCGCAGGCCCTGCGCGCCTTCCTGCGCCAGGATCCGGATGTGATCATGGTCGGCGAGATCCGC
GATCTTGAAACGGCCGAGATCGCCATCAAGGCAGCGCAGACCGGCCATATGGTGATGTCGACCCTGCACACCAACAGCGC
TGCGGAAACCCTGACACGCCTGCGCAACATGGGCGTCCCGGCGTTCAATATCGCGACGTCGGTCAACCTGATCATCGCCC
AGCGACTGGCGCGGAAGCTTTGCCCGAGCTGCAAGAAGGCTGTCGATATCCCGCGCGAGGCCCTGCTGCGCGAAGGCTTC
CCGGAACAGGCGATCGGGACATTCAAGATCTACGGGCCGGTGGGTTGCGATAACTGCAAGGGCGGCTACAAGGGCCGCGT
CGGTATTTATGAAGTGGTTAAAAACACGCCGGCATTGCAGCGCATTATCATGGAAGACGGCAACTCCCTGGATATCTCCA
AGCAGATGCGCAAGGACGGCTTCAATGACCTGCGCACCTCGGCCCTGTTCAAGGCCATGCAAGGCGTGACCAGCCTCGAA
GAAGTCAACCGGGTCACCAAGGATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilB | Acinetobacter baumannii D1279779 |
60.284 |
99.296 |
0.599 |
| pilB | Acinetobacter baylyi ADP1 |
59.043 |
99.296 |
0.586 |
| pilB | Legionella pneumophila strain ERS1305867 |
53.59 |
100 |
0.539 |
| pilB | Vibrio cholerae strain A1552 |
51.337 |
98.768 |
0.507 |
| pilF | Neisseria gonorrhoeae MS11 |
49.293 |
99.648 |
0.491 |
| pilB | Vibrio parahaemolyticus RIMD 2210633 |
52.805 |
91.021 |
0.481 |
| pilB | Vibrio campbellii strain DS40M4 |
52.408 |
91.373 |
0.479 |
| pilB/pilB1 | Synechocystis sp. PCC 6803 |
40.192 |
91.549 |
0.368 |