Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | CL52_RS15820 | Genome accession | NZ_CP007511 |
| Coordinates | 3421833..3422702 (-) | Length | 289 a.a. |
| NCBI ID | WP_043221695.1 | Uniprot ID | A0A8D3Y3V2 |
| Organism | Stutzerimonas balearica DSM 6083 strain DSM6083 (=SP1402) | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3416833..3427702
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CL52_RS15790 (CL52_16050) | - | 3416973..3418184 (-) | 1212 | WP_041104009.1 | cytochrome bc complex cytochrome b subunit | - |
| CL52_RS15795 (CL52_16055) | petA | 3418184..3418777 (-) | 594 | WP_041104007.1 | ubiquinol-cytochrome c reductase iron-sulfur subunit | - |
| CL52_RS15800 (CL52_16060) | rpsI | 3419031..3419423 (-) | 393 | WP_043221690.1 | 30S ribosomal protein S9 | - |
| CL52_RS15805 (CL52_16065) | rplM | 3419438..3419866 (-) | 429 | WP_041104003.1 | 50S ribosomal protein L13 | - |
| CL52_RS15810 (CL52_16070) | - | 3420233..3420943 (+) | 711 | WP_043221692.1 | energy-coupling factor ABC transporter permease | - |
| CL52_RS20860 | yacG | 3420937..3421134 (-) | 198 | WP_074519929.1 | DNA gyrase inhibitor YacG | - |
| CL52_RS15815 (CL52_16075) | coaE | 3421131..3421739 (-) | 609 | WP_043221694.1 | dephospho-CoA kinase | - |
| CL52_RS15820 (CL52_16080) | pilD | 3421833..3422702 (-) | 870 | WP_043221695.1 | A24 family peptidase | Machinery gene |
| CL52_RS15825 (CL52_16085) | pilC | 3422702..3423922 (-) | 1221 | WP_043221697.1 | type II secretion system F family protein | Machinery gene |
| CL52_RS15830 (CL52_16090) | pilB | 3423925..3425631 (-) | 1707 | WP_043221699.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| CL52_RS15835 (CL52_16095) | - | 3425950..3426435 (+) | 486 | WP_043221701.1 | pilin | - |
| CL52_RS21150 (CL52_16100) | - | 3426630..3426781 (+) | 152 | Protein_3186 | IS4 family transposase | - |
Sequence
Protein
Download Length: 289 a.a. Molecular weight: 31916.82 Da Isoelectric Point: 7.3239
>NTDB_id=120180 CL52_RS15820 WP_043221695.1 3421833..3422702(-) (pilD) [Stutzerimonas balearica DSM 6083 strain DSM6083 (=SP1402)]
MPIIEYLASHELAFVLSAALLGLLVGSFLNVLIYRLPVMMQREWREQAREYLSLEPEPVGPRFNLLLPASSCPHCGHSIR
AWENVPLVSWVLLRGRCSACRTGISARYPLVELACALLSGFTAWHFGFTWQAGAILLLGWGLLAMSMIDIDHQLLPDSLV
LPLLWFGLICNHFGLFVALGDALWGAVFGYLSLWAVYWLFKLVTGKEGMGYGDFKLLAMIGAWGGWQVLPLTILLSSLVG
AVIGTISLRWRNAAAGTPIPFGPYLAIAGWIALVWGQQITDRYLQLAGF
MPIIEYLASHELAFVLSAALLGLLVGSFLNVLIYRLPVMMQREWREQAREYLSLEPEPVGPRFNLLLPASSCPHCGHSIR
AWENVPLVSWVLLRGRCSACRTGISARYPLVELACALLSGFTAWHFGFTWQAGAILLLGWGLLAMSMIDIDHQLLPDSLV
LPLLWFGLICNHFGLFVALGDALWGAVFGYLSLWAVYWLFKLVTGKEGMGYGDFKLLAMIGAWGGWQVLPLTILLSSLVG
AVIGTISLRWRNAAAGTPIPFGPYLAIAGWIALVWGQQITDRYLQLAGF
Nucleotide
Download Length: 870 bp
>NTDB_id=120180 CL52_RS15820 WP_043221695.1 3421833..3422702(-) (pilD) [Stutzerimonas balearica DSM 6083 strain DSM6083 (=SP1402)]
ATGCCGATCATCGAGTACCTGGCCAGCCACGAGCTGGCCTTTGTTTTGTCTGCGGCTTTGCTTGGATTGCTGGTTGGCAG
CTTTCTCAATGTGCTGATTTATCGGCTGCCGGTGATGATGCAGCGGGAATGGCGCGAGCAGGCGAGGGAGTACCTTTCGC
TCGAGCCTGAGCCTGTCGGGCCGCGATTCAACCTTTTGCTACCTGCTTCTTCCTGTCCGCACTGTGGCCACTCTATTCGT
GCCTGGGAGAACGTCCCTCTGGTGAGCTGGGTGCTGCTGCGGGGGCGCTGTTCGGCATGTCGAACAGGTATCAGTGCCCG
TTATCCGCTGGTGGAGCTGGCCTGTGCGCTCCTTTCGGGGTTCACGGCCTGGCACTTCGGCTTCACCTGGCAAGCCGGGG
CGATCCTGCTGTTGGGCTGGGGGCTGCTGGCCATGAGCATGATCGATATCGATCACCAATTGCTGCCCGACTCGCTCGTG
CTGCCTCTTCTCTGGTTCGGCCTGATCTGCAACCATTTCGGCCTATTCGTTGCGCTCGGCGATGCGCTTTGGGGAGCTGT
CTTCGGCTACCTCAGCCTGTGGGCGGTGTACTGGCTATTCAAGCTCGTCACTGGCAAGGAAGGCATGGGCTACGGTGACT
TCAAGCTTCTTGCGATGATAGGGGCGTGGGGGGGATGGCAGGTGCTGCCGCTAACCATCCTCCTGTCATCGCTGGTCGGC
GCCGTAATCGGCACGATTTCACTGAGATGGCGGAATGCGGCTGCCGGCACGCCTATCCCGTTCGGCCCGTACCTGGCGAT
CGCCGGCTGGATCGCGCTGGTGTGGGGGCAGCAGATCACCGATCGCTATCTGCAGCTTGCCGGCTTCTGA
ATGCCGATCATCGAGTACCTGGCCAGCCACGAGCTGGCCTTTGTTTTGTCTGCGGCTTTGCTTGGATTGCTGGTTGGCAG
CTTTCTCAATGTGCTGATTTATCGGCTGCCGGTGATGATGCAGCGGGAATGGCGCGAGCAGGCGAGGGAGTACCTTTCGC
TCGAGCCTGAGCCTGTCGGGCCGCGATTCAACCTTTTGCTACCTGCTTCTTCCTGTCCGCACTGTGGCCACTCTATTCGT
GCCTGGGAGAACGTCCCTCTGGTGAGCTGGGTGCTGCTGCGGGGGCGCTGTTCGGCATGTCGAACAGGTATCAGTGCCCG
TTATCCGCTGGTGGAGCTGGCCTGTGCGCTCCTTTCGGGGTTCACGGCCTGGCACTTCGGCTTCACCTGGCAAGCCGGGG
CGATCCTGCTGTTGGGCTGGGGGCTGCTGGCCATGAGCATGATCGATATCGATCACCAATTGCTGCCCGACTCGCTCGTG
CTGCCTCTTCTCTGGTTCGGCCTGATCTGCAACCATTTCGGCCTATTCGTTGCGCTCGGCGATGCGCTTTGGGGAGCTGT
CTTCGGCTACCTCAGCCTGTGGGCGGTGTACTGGCTATTCAAGCTCGTCACTGGCAAGGAAGGCATGGGCTACGGTGACT
TCAAGCTTCTTGCGATGATAGGGGCGTGGGGGGGATGGCAGGTGCTGCCGCTAACCATCCTCCTGTCATCGCTGGTCGGC
GCCGTAATCGGCACGATTTCACTGAGATGGCGGAATGCGGCTGCCGGCACGCCTATCCCGTTCGGCCCGTACCTGGCGAT
CGCCGGCTGGATCGCGCTGGTGTGGGGGCAGCAGATCACCGATCGCTATCTGCAGCTTGCCGGCTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
54.745 |
94.81 |
0.519 |
| pilD | Vibrio campbellii strain DS40M4 |
53.48 |
94.464 |
0.505 |
| pilD | Acinetobacter baumannii D1279779 |
49.296 |
98.27 |
0.484 |
| pilD | Acinetobacter nosocomialis M2 |
49.296 |
98.27 |
0.484 |
| pilD | Neisseria gonorrhoeae MS11 |
50.19 |
91.003 |
0.457 |