Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACOQOE_RS04490 Genome accession   NZ_OZ245004
Coordinates   971328..972548 (-) Length   406 a.a.
NCBI ID   WP_067862381.1    Uniprot ID   -
Organism   MAG: Neptuniibacter marinus isolate 5ffc281b-0633-46d3-a470-07ce90f1f764     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 966328..977548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOQOE_RS04465 argJ 967381..968601 (+) 1221 WP_420554984.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  ACOQOE_RS04470 - 968653..969606 (+) 954 WP_420554985.1 Nudix family hydrolase -
  ACOQOE_RS04475 yacG 969575..969811 (-) 237 WP_420554986.1 DNA gyrase inhibitor YacG -
  ACOQOE_RS04480 coaE 969804..970415 (-) 612 WP_420554987.1 dephospho-CoA kinase -
  ACOQOE_RS04485 pilD 970416..971261 (-) 846 WP_420554988.1 prepilin peptidase Machinery gene
  ACOQOE_RS04490 pilC 971328..972548 (-) 1221 WP_067862381.1 type II secretion system F family protein Machinery gene
  ACOQOE_RS04495 pilB 972567..974300 (-) 1734 WP_420554989.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACOQOE_RS04500 - 974474..974899 (+) 426 WP_420554990.1 pilin -
  ACOQOE_RS04505 - 974991..975332 (+) 342 WP_420554991.1 hypothetical protein -
  ACOQOE_RS04510 nadC 975458..976303 (-) 846 WP_420554992.1 carboxylating nicotinate-nucleotide diphosphorylase -
  ACOQOE_RS04515 ampD 976418..976987 (+) 570 WP_420555460.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 43720.12 Da        Isoelectric Point: 9.2818

>NTDB_id=1171215 ACOQOE_RS04490 WP_067862381.1 971328..972548(-) (pilC) [MAG: Neptuniibacter marinus isolate 5ffc281b-0633-46d3-a470-07ce90f1f764]
MAKEAKLHTFTWQGKDKSGNASKGKVDASNIAMAKAQLRKQGILPSKVAKERGAGLFSAKSKPIKPVDIAFFTRQVATML
KSGVPLLQGLDITAGGVEKDKLKDIIYGIKNDVNGGLDFSTALTKYPEHFDDLYCSLVSAGEQSGALEQMLDRIATYKEK
LESLKAKIKKALTYPTAVIIVGIVVSAILLVKVVPQFESVFDSFGADLPAFTLFVIHLSEVAQEWWWIVLIAIGFAGYAF
NKAQTKSKRFRDAVDKAMLKIPVIGQILHNASIARFSRTLATTFAAGVPLVNALDSAAGASGNALYRDAILQIRNGVSTG
QSLKDAVTMTGIFPNMTVQMIAIGEEAGSLEMMLEKVADFYEELVDNAVDNLSSLLEPLIMAVLGVLVGGLVIAMYLPIF
QLGNVV

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=1171215 ACOQOE_RS04490 WP_067862381.1 971328..972548(-) (pilC) [MAG: Neptuniibacter marinus isolate 5ffc281b-0633-46d3-a470-07ce90f1f764]
ATGGCCAAAGAAGCCAAGTTACATACATTTACCTGGCAGGGAAAAGATAAAAGCGGCAATGCCAGTAAAGGGAAAGTTGA
TGCCAGCAATATTGCAATGGCTAAAGCTCAACTACGTAAACAGGGTATATTACCCTCCAAAGTAGCTAAGGAGAGAGGGG
CTGGGCTTTTTAGTGCTAAAAGCAAACCTATAAAACCAGTAGACATTGCCTTTTTTACTCGCCAAGTGGCTACTATGCTT
AAATCCGGTGTTCCTTTACTGCAAGGCTTAGACATTACCGCCGGTGGTGTCGAGAAAGACAAACTTAAAGATATTATTTA
CGGCATTAAAAATGATGTAAATGGGGGGCTTGATTTTTCCACTGCCTTAACCAAATACCCTGAGCATTTTGACGATCTTT
ACTGCAGCCTTGTAAGCGCGGGCGAACAATCCGGCGCCTTAGAGCAGATGCTCGATCGTATTGCCACCTACAAAGAGAAA
CTGGAAAGCCTAAAAGCCAAAATCAAAAAAGCCTTAACTTACCCCACCGCGGTTATCATCGTAGGTATTGTCGTATCCGC
TATATTGCTGGTAAAAGTGGTGCCGCAATTTGAATCAGTATTTGATAGCTTTGGTGCCGACCTCCCTGCCTTTACTCTCT
TTGTTATTCATCTATCCGAAGTCGCTCAAGAGTGGTGGTGGATTGTACTGATCGCTATAGGCTTCGCCGGTTATGCTTTT
AATAAAGCCCAAACCAAGTCAAAGAGATTTAGGGATGCAGTAGATAAAGCGATGCTTAAAATCCCAGTGATTGGCCAAAT
TTTACACAATGCCTCAATTGCCCGCTTTTCTAGAACCTTAGCTACAACCTTTGCTGCCGGTGTGCCTTTAGTTAATGCAC
TGGACTCTGCTGCAGGAGCCTCGGGTAACGCACTCTACCGAGATGCCATACTCCAGATCAGAAATGGGGTATCAACAGGG
CAATCACTAAAAGATGCAGTGACCATGACAGGGATTTTCCCTAATATGACCGTGCAAATGATCGCCATCGGTGAGGAAGC
AGGCTCACTGGAGATGATGCTAGAGAAAGTGGCAGATTTCTACGAAGAGCTAGTTGATAACGCGGTTGATAATCTTTCTA
GCTTACTAGAACCTCTTATCATGGCTGTGCTCGGGGTATTAGTTGGTGGCCTAGTTATCGCCATGTACTTACCTATATTC
CAGCTAGGTAATGTGGTTTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

58.231

100

0.584
  pilC Acinetobacter baumannii D1279779

55.941

99.507

0.557
  pilC Legionella pneumophila strain ERS1305867

56.25

98.522

0.554
  pilC Acinetobacter baylyi ADP1

55

98.522

0.542
  pilC Vibrio campbellii strain DS40M4

41.975

99.754

0.419
  pilG Neisseria gonorrhoeae MS11

42.04

99.015

0.416
  pilG Neisseria meningitidis 44/76-A

42.04

99.015

0.416
  pilC Vibrio cholerae strain A1552

42

98.522

0.414

Multiple sequence alignment