Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | ACOOFO_RS09130 | Genome accession | NZ_OZ244162 |
| Coordinates | 1983895..1985112 (+) | Length | 405 a.a. |
| NCBI ID | WP_420426474.1 | Uniprot ID | - |
| Organism | MAG: Algiphilus sp. isolate dd919ab0-ff71-4ff6-8152-ac5c3678e526 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1978895..1990112
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACOOFO_RS09120 | - | 1981161..1982018 (-) | 858 | WP_420426472.1 | DUF4382 domain-containing protein | - |
| ACOOFO_RS09125 | pilB | 1982127..1983869 (+) | 1743 | WP_420426473.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ACOOFO_RS09130 | pilC | 1983895..1985112 (+) | 1218 | WP_420426474.1 | type II secretion system F family protein | Machinery gene |
| ACOOFO_RS09135 | - | 1985116..1985964 (+) | 849 | WP_420426475.1 | prepilin peptidase | - |
| ACOOFO_RS09140 | coaE | 1985964..1986605 (+) | 642 | WP_420426476.1 | dephospho-CoA kinase | - |
| ACOOFO_RS09145 | zapD | 1986660..1987433 (+) | 774 | WP_420426477.1 | cell division protein ZapD | - |
| ACOOFO_RS09150 | - | 1987430..1987654 (+) | 225 | WP_420426478.1 | DNA gyrase inhibitor YacG | - |
| ACOOFO_RS09155 | tadA | 1987675..1988142 (+) | 468 | WP_420426479.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 405 a.a. Molecular weight: 44349.98 Da Isoelectric Point: 9.5919
>NTDB_id=1171039 ACOOFO_RS09130 WP_420426474.1 1983895..1985112(+) (pilC) [MAG: Algiphilus sp. isolate dd919ab0-ff71-4ff6-8152-ac5c3678e526]
MAEAGAKEVLFQWEGTDRKGKRIKGQTSGKSETDIKRALRKQGINPLRVRKQSSLFGSRKKKITGQDIAIFARQMATMMA
AGLPLVQALELVGNGHDNPSMGELILAVKTEVESGSSFAQALAKHPVHFDDLFVNLVDAGEKSGTLETLLDKVALYKEKT
EALRKKVKKALTYPSAVVAVAFIVTGILLYFVVPQFQDLFRGFGADLPVFTLMVIRLSEFVQVYWWMILLGLGATGFGFS
YIKKRSPRFRRFLDRVALHLPIIGVIVHKSALARYHRTLSTMFAAGVPLVEALDPVARASGNILFEEAIYNIRDDVASGT
QLYQGMQTAGLFPPMATQMVAIGEESGALDTMCAKVATYYEEEVDALVDSLSSLLEPLIMSVLGILVGGLVVAMYLPIFQ
LGQVV
MAEAGAKEVLFQWEGTDRKGKRIKGQTSGKSETDIKRALRKQGINPLRVRKQSSLFGSRKKKITGQDIAIFARQMATMMA
AGLPLVQALELVGNGHDNPSMGELILAVKTEVESGSSFAQALAKHPVHFDDLFVNLVDAGEKSGTLETLLDKVALYKEKT
EALRKKVKKALTYPSAVVAVAFIVTGILLYFVVPQFQDLFRGFGADLPVFTLMVIRLSEFVQVYWWMILLGLGATGFGFS
YIKKRSPRFRRFLDRVALHLPIIGVIVHKSALARYHRTLSTMFAAGVPLVEALDPVARASGNILFEEAIYNIRDDVASGT
QLYQGMQTAGLFPPMATQMVAIGEESGALDTMCAKVATYYEEEVDALVDSLSSLLEPLIMSVLGILVGGLVVAMYLPIFQ
LGQVV
Nucleotide
Download Length: 1218 bp
>NTDB_id=1171039 ACOOFO_RS09130 WP_420426474.1 1983895..1985112(+) (pilC) [MAG: Algiphilus sp. isolate dd919ab0-ff71-4ff6-8152-ac5c3678e526]
ATGGCAGAAGCAGGCGCCAAGGAAGTGCTGTTCCAGTGGGAGGGCACAGACCGCAAGGGCAAGCGGATCAAGGGCCAGAC
CAGCGGTAAGAGCGAAACCGACATCAAGCGCGCCCTGCGCAAGCAGGGGATCAATCCACTGCGGGTGCGCAAGCAGTCCA
GTCTGTTCGGTTCCCGCAAGAAGAAGATCACCGGTCAGGACATCGCGATCTTCGCGCGCCAGATGGCGACGATGATGGCG
GCCGGGCTGCCACTCGTGCAGGCCCTGGAGCTGGTCGGGAACGGGCACGACAATCCTTCCATGGGCGAGCTCATCCTCGC
CGTGAAAACCGAGGTGGAGTCGGGCAGTTCTTTCGCGCAGGCGCTGGCCAAGCACCCCGTCCATTTCGACGATCTGTTCG
TCAATCTCGTGGATGCCGGCGAAAAGTCGGGCACGCTCGAGACGCTGCTCGACAAGGTTGCCCTGTACAAGGAAAAGACC
GAGGCGCTTCGGAAAAAGGTCAAGAAGGCGCTGACCTATCCATCGGCGGTGGTGGCGGTGGCCTTCATTGTCACCGGCAT
CCTGTTGTACTTCGTGGTGCCGCAGTTCCAGGATCTGTTCCGTGGATTCGGTGCGGACCTGCCGGTCTTCACTCTGATGG
TCATCCGCCTGTCGGAGTTTGTGCAGGTCTACTGGTGGATGATCCTGCTGGGCCTGGGTGCGACCGGCTTCGGTTTCAGC
TACATCAAGAAGCGTTCGCCGCGATTCAGGCGTTTTCTCGATCGCGTCGCGCTGCACTTGCCGATTATTGGCGTCATCGT
TCACAAATCCGCGCTGGCGCGCTATCACCGTACGCTGTCGACCATGTTCGCAGCCGGTGTCCCGCTCGTGGAGGCACTGG
ATCCGGTGGCGCGTGCCTCCGGCAACATCCTGTTCGAGGAAGCGATCTACAACATTCGTGATGACGTCGCCAGCGGCACG
CAGCTCTACCAGGGCATGCAGACCGCCGGCCTTTTTCCGCCAATGGCGACGCAGATGGTCGCCATTGGCGAGGAATCCGG
CGCCCTCGACACCATGTGCGCGAAGGTGGCGACCTATTACGAAGAGGAAGTCGACGCGCTGGTCGACTCCCTCTCCAGCC
TGCTCGAGCCGCTGATCATGTCCGTCCTCGGCATTCTCGTGGGCGGTCTCGTGGTGGCCATGTATCTGCCCATCTTCCAG
CTCGGCCAGGTGGTCTGA
ATGGCAGAAGCAGGCGCCAAGGAAGTGCTGTTCCAGTGGGAGGGCACAGACCGCAAGGGCAAGCGGATCAAGGGCCAGAC
CAGCGGTAAGAGCGAAACCGACATCAAGCGCGCCCTGCGCAAGCAGGGGATCAATCCACTGCGGGTGCGCAAGCAGTCCA
GTCTGTTCGGTTCCCGCAAGAAGAAGATCACCGGTCAGGACATCGCGATCTTCGCGCGCCAGATGGCGACGATGATGGCG
GCCGGGCTGCCACTCGTGCAGGCCCTGGAGCTGGTCGGGAACGGGCACGACAATCCTTCCATGGGCGAGCTCATCCTCGC
CGTGAAAACCGAGGTGGAGTCGGGCAGTTCTTTCGCGCAGGCGCTGGCCAAGCACCCCGTCCATTTCGACGATCTGTTCG
TCAATCTCGTGGATGCCGGCGAAAAGTCGGGCACGCTCGAGACGCTGCTCGACAAGGTTGCCCTGTACAAGGAAAAGACC
GAGGCGCTTCGGAAAAAGGTCAAGAAGGCGCTGACCTATCCATCGGCGGTGGTGGCGGTGGCCTTCATTGTCACCGGCAT
CCTGTTGTACTTCGTGGTGCCGCAGTTCCAGGATCTGTTCCGTGGATTCGGTGCGGACCTGCCGGTCTTCACTCTGATGG
TCATCCGCCTGTCGGAGTTTGTGCAGGTCTACTGGTGGATGATCCTGCTGGGCCTGGGTGCGACCGGCTTCGGTTTCAGC
TACATCAAGAAGCGTTCGCCGCGATTCAGGCGTTTTCTCGATCGCGTCGCGCTGCACTTGCCGATTATTGGCGTCATCGT
TCACAAATCCGCGCTGGCGCGCTATCACCGTACGCTGTCGACCATGTTCGCAGCCGGTGTCCCGCTCGTGGAGGCACTGG
ATCCGGTGGCGCGTGCCTCCGGCAACATCCTGTTCGAGGAAGCGATCTACAACATTCGTGATGACGTCGCCAGCGGCACG
CAGCTCTACCAGGGCATGCAGACCGCCGGCCTTTTTCCGCCAATGGCGACGCAGATGGTCGCCATTGGCGAGGAATCCGG
CGCCCTCGACACCATGTGCGCGAAGGTGGCGACCTATTACGAAGAGGAAGTCGACGCGCTGGTCGACTCCCTCTCCAGCC
TGCTCGAGCCGCTGATCATGTCCGTCCTCGGCATTCTCGTGGGCGGTCTCGTGGTGGCCATGTATCTGCCCATCTTCCAG
CTCGGCCAGGTGGTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
58.765 |
100 |
0.588 |
| pilC | Acinetobacter baumannii D1279779 |
56.423 |
98.025 |
0.553 |
| pilC | Acinetobacter baylyi ADP1 |
55.025 |
98.272 |
0.541 |
| pilC | Legionella pneumophila strain ERS1305867 |
54.798 |
97.778 |
0.536 |
| pilG | Neisseria gonorrhoeae MS11 |
47.5 |
98.765 |
0.469 |
| pilG | Neisseria meningitidis 44/76-A |
47.25 |
98.765 |
0.467 |
| pilC | Vibrio cholerae strain A1552 |
44.192 |
97.778 |
0.432 |
| pilC | Vibrio campbellii strain DS40M4 |
41.96 |
98.272 |
0.412 |
| pilC | Thermus thermophilus HB27 |
37.845 |
98.519 |
0.373 |