Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   ACOFKY_RS18015 Genome accession   NZ_OZ241355
Coordinates   3889888..3892089 (+) Length   733 a.a.
NCBI ID   WP_336953695.1    Uniprot ID   -
Organism   MAG: Acinetobacter sp. isolate 91b77bb6-a760-4576-a270-dd86adb6cd71     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3884888..3897089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOFKY_RS17995 comM 3886894..3887952 (+) 1059 WP_336953691.1 pilus assembly protein PilM Machinery gene
  ACOFKY_RS18000 pilN 3887952..3888593 (+) 642 WP_336953692.1 PilN domain-containing protein Machinery gene
  ACOFKY_RS18005 pilO 3888590..3889339 (+) 750 WP_336953693.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACOFKY_RS18010 pilP 3889336..3889866 (+) 531 WP_419327977.1 pilus assembly protein PilP Machinery gene
  ACOFKY_RS18015 pilQ 3889888..3892089 (+) 2202 WP_336953695.1 type IV pilus secretin PilQ family protein Machinery gene
  ACOFKY_RS18020 aroK 3892126..3892668 (+) 543 WP_004725433.1 shikimate kinase AroK -
  ACOFKY_RS18025 aroB 3892705..3893784 (+) 1080 WP_419819873.1 3-dehydroquinate synthase -
  ACOFKY_RS18030 - 3893801..3894667 (+) 867 WP_336953697.1 hypothetical protein -

Sequence

Protein


Download         Length: 733 a.a.        Molecular weight: 79665.19 Da        Isoelectric Point: 8.7832

>NTDB_id=1170798 ACOFKY_RS18015 WP_336953695.1 3889888..3892089(+) (pilQ) [MAG: Acinetobacter sp. isolate 91b77bb6-a760-4576-a270-dd86adb6cd71]
MKKSLKNIFNGDGKFMNSQLRQFTMAAVSIAIMQVAIAQTTMTNIVPMKIPGQGTEIRVMFNGLPPQPQAYQLDNPSRLI
LDFDQAKQTINQSSIAVASEEASTVDVAADDQRSRLTVNLKNSGSFTTRVEGNTFILKINNNANQATALPTYAASSLNKQ
NQGIADIGFQRGASGEGQVIVNLSGANTPVDVQQQGSKVVIRTLGNKIPAHLIRRLNVNDFATPVSSVDAYNDGSNGVIT
IQSSGSYEYMAFQAENKLTVSLKRPAESKTNRPNSSQSYTGKKISLDFQDIEVRRVLQLLADFTSINMVAADSVQGNITL
RLKDVPWDQALDIILKTKNLDKRRNGSVIWIAPVTELIKAEEDEAKALAQSVKLAPIQTEYIQLNYAKATDIEKLITEGK
NSKNTNNSNTNSSNSLDLNNLDPYGNNVGSLLSPRGTVTVDARTNTLIITDTAVKIDQIRKMVDLLDISVKQVMVEARIV
RATTDFTKEMGVKWGILSQGVTKNNDLLVGGSDQTLWDLKTPDSNGKYTITRPDNLNVDLGVTTPGASKIAFGLISLSDF
MLDLELSALQADGYGEVISTPKVMTADKQKAKVASGQQIPYQSTQTAGGSAVATTEFKDALLSLDVTPSITPDGKIQMQL
NVTSDSAGQVVNGNVAINKNEINTNVLVDNGETVVLGGIFEQETKNSQTKVPFLGDIPYLGRLFRKDVKSDNKRELLIFV
TPRIVNDSRTRNH

Nucleotide


Download         Length: 2202 bp        

>NTDB_id=1170798 ACOFKY_RS18015 WP_336953695.1 3889888..3892089(+) (pilQ) [MAG: Acinetobacter sp. isolate 91b77bb6-a760-4576-a270-dd86adb6cd71]
ATGAAAAAGAGTTTGAAAAATATCTTTAACGGGGATGGTAAGTTTATGAATAGTCAACTTCGTCAATTTACTATGGCGGC
AGTGTCAATTGCGATTATGCAGGTTGCAATAGCGCAAACAACTATGACCAATATTGTACCAATGAAAATACCAGGGCAAG
GTACAGAAATTCGTGTCATGTTTAATGGTTTACCTCCACAGCCTCAAGCCTATCAATTGGACAATCCATCTCGACTGATT
TTGGACTTTGATCAGGCGAAGCAAACGATCAATCAATCATCCATTGCTGTGGCAAGTGAAGAAGCGTCTACGGTGGATGT
TGCGGCCGATGATCAACGTTCACGCTTAACCGTAAATTTAAAAAATAGTGGTTCTTTTACAACGCGTGTTGAAGGGAATA
CTTTTATTTTAAAAATTAATAATAATGCTAATCAAGCGACTGCATTACCCACTTATGCTGCATCTTCGCTGAATAAGCAA
AATCAAGGCATTGCAGATATCGGTTTTCAGCGTGGGGCTTCTGGAGAAGGACAGGTTATTGTGAATCTCTCAGGTGCAAA
TACGCCTGTAGATGTACAACAACAAGGCAGTAAAGTTGTTATTCGAACTTTGGGAAATAAAATCCCAGCGCATTTAATCC
GTCGTTTAAATGTGAATGATTTTGCAACGCCAGTTTCTTCTGTAGATGCTTATAATGACGGTTCAAATGGCGTCATTACC
ATTCAATCAAGTGGTAGCTATGAATATATGGCTTTCCAAGCTGAAAACAAATTGACAGTGAGTTTAAAGCGTCCCGCAGA
AAGCAAAACAAATCGTCCAAATTCAAGTCAGTCTTATACGGGTAAGAAAATCTCGCTTGATTTTCAAGATATAGAAGTAC
GACGTGTTCTACAGCTACTTGCTGATTTTACTAGTATCAATATGGTGGCAGCAGATTCAGTTCAAGGTAATATTACTTTA
CGTCTAAAAGACGTACCTTGGGATCAGGCCTTAGATATCATTTTGAAAACAAAAAACTTGGATAAGCGTCGCAATGGCAG
CGTAATTTGGATTGCACCTGTAACTGAGCTAATTAAGGCAGAAGAAGATGAAGCAAAGGCTTTAGCTCAAAGTGTTAAAT
TAGCACCAATCCAAACTGAATATATTCAGTTGAATTATGCTAAAGCTACGGATATCGAGAAATTAATCACAGAAGGTAAA
AATTCTAAAAATACAAATAATTCAAATACAAATAGTTCTAATAGTTTGGATTTAAATAATTTAGATCCATATGGAAATAA
TGTAGGAAGTTTATTAAGTCCTCGAGGTACGGTTACTGTAGATGCTAGGACAAATACACTGATTATTACAGATACAGCCG
TAAAAATTGACCAAATCCGTAAAATGGTTGATTTACTAGATATTTCCGTAAAACAAGTCATGGTTGAAGCGCGAATTGTT
CGGGCAACAACAGATTTTACTAAAGAAATGGGGGTAAAGTGGGGGATTTTATCTCAAGGGGTTACCAAGAATAATGACTT
ACTTGTTGGGGGAAGTGATCAAACACTTTGGGATTTAAAAACCCCAGATAGTAATGGCAAATATACTATTACACGCCCTG
ATAATTTAAATGTAGATCTTGGCGTGACGACTCCCGGTGCAAGTAAAATTGCATTTGGTCTAATTAGTCTTTCTGATTTT
ATGTTGGATCTAGAGTTATCAGCATTACAGGCTGATGGTTATGGTGAAGTGATTTCAACGCCAAAAGTAATGACTGCGGA
TAAACAAAAGGCCAAAGTGGCATCTGGTCAACAAATTCCGTATCAATCAACTCAAACAGCAGGGGGGAGTGCAGTTGCAA
CGACTGAATTTAAAGATGCTTTGTTAAGTCTAGATGTGACACCGAGTATTACCCCGGATGGAAAAATCCAAATGCAGCTC
AACGTCACAAGCGATTCAGCAGGTCAAGTAGTAAATGGAAATGTTGCAATTAATAAAAATGAAATTAATACCAATGTATT
GGTTGATAATGGCGAAACAGTGGTGCTAGGGGGGATTTTTGAACAAGAAACTAAAAATAGCCAAACCAAAGTTCCATTTT
TAGGAGATATTCCATATCTTGGTCGATTATTTAGAAAAGATGTTAAGTCTGATAATAAACGAGAATTACTAATCTTTGTG
ACACCAAGAATTGTTAATGACAGTCGTACGAGAAATCATTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(311-353)

Bacterial type II/III secretion system short domain (Secretin_N)

(380-472)

Bacterial type II and III secretion system protein (Secretin)

(568-725)

AMIN domain (AMIN)

(55-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

74.415

99.181

0.738
  pilQ Acinetobacter baumannii strain A118

74.415

99.181

0.738
  comQ Acinetobacter baylyi ADP1

72.184

98.09

0.708
  pilQ Pseudomonas aeruginosa PAK

39.459

100

0.398
  pilQ Legionella pneumophila strain ERS1305867

37.926

96.044

0.364
  pilQ Legionella pneumophila strain Lp02

37.447

96.18

0.36

Multiple sequence alignment