Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   ACOFKY_RS18010 Genome accession   NZ_OZ241355
Coordinates   3889336..3889866 (+) Length   176 a.a.
NCBI ID   WP_419327977.1    Uniprot ID   -
Organism   MAG: Acinetobacter sp. isolate 91b77bb6-a760-4576-a270-dd86adb6cd71     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3884336..3894866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOFKY_RS17995 comM 3886894..3887952 (+) 1059 WP_336953691.1 pilus assembly protein PilM Machinery gene
  ACOFKY_RS18000 pilN 3887952..3888593 (+) 642 WP_336953692.1 PilN domain-containing protein Machinery gene
  ACOFKY_RS18005 pilO 3888590..3889339 (+) 750 WP_336953693.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACOFKY_RS18010 pilP 3889336..3889866 (+) 531 WP_419327977.1 pilus assembly protein PilP Machinery gene
  ACOFKY_RS18015 pilQ 3889888..3892089 (+) 2202 WP_336953695.1 type IV pilus secretin PilQ family protein Machinery gene
  ACOFKY_RS18020 aroK 3892126..3892668 (+) 543 WP_004725433.1 shikimate kinase AroK -
  ACOFKY_RS18025 aroB 3892705..3893784 (+) 1080 WP_419819873.1 3-dehydroquinate synthase -
  ACOFKY_RS18030 - 3893801..3894667 (+) 867 WP_336953697.1 hypothetical protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19446.55 Da        Isoelectric Point: 7.6677

>NTDB_id=1170797 ACOFKY_RS18010 WP_419327977.1 3889336..3889866(+) (pilP) [MAG: Acinetobacter sp. isolate 91b77bb6-a760-4576-a270-dd86adb6cd71]
MKQLIKIVCGISCAVLLVGCDSRIDAVNQEMANIRNQQPLPIEPAPVFNPVPSFNYSAQQLRSPFLPNSLANELKVMSGK
QVYPNFSRQPQPLESYPLESLTLKGSMKGTVGQTVGLIKTPDGEVERVQRGNYMGMNQGRIIEITPTRIDLLEIVPDGRD
GYIERPRSLVLIGPID

Nucleotide


Download         Length: 531 bp        

>NTDB_id=1170797 ACOFKY_RS18010 WP_419327977.1 3889336..3889866(+) (pilP) [MAG: Acinetobacter sp. isolate 91b77bb6-a760-4576-a270-dd86adb6cd71]
ATGAAGCAGCTCATTAAAATAGTTTGTGGAATCTCATGTGCGGTGCTGTTGGTGGGGTGTGATTCTCGAATTGATGCCGT
AAATCAAGAGATGGCAAATATTCGAAATCAGCAACCATTACCGATTGAGCCTGCGCCAGTATTTAATCCGGTACCAAGTT
TTAATTATTCAGCTCAACAATTACGTAGCCCATTTTTACCGAACTCATTGGCAAATGAGTTGAAAGTTATGTCAGGTAAG
CAAGTCTACCCTAATTTTTCAAGACAGCCACAACCACTTGAAAGTTATCCTTTAGAGTCATTAACACTAAAAGGAAGTAT
GAAAGGAACAGTTGGGCAGACAGTGGGTTTGATTAAAACACCTGATGGCGAGGTTGAGCGGGTACAACGTGGGAATTACA
TGGGGATGAATCAGGGGCGAATTATTGAAATTACGCCTACCCGTATTGATTTATTGGAAATTGTTCCAGATGGTCGAGAC
GGTTATATAGAAAGACCACGAAGTCTAGTTCTAATCGGTCCAATAGATTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(28-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

75

93.182

0.699
  comL Acinetobacter baylyi ADP1

75.949

89.773

0.682

Multiple sequence alignment