Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACNALX_RS01795 Genome accession   NZ_OZ223210
Coordinates   356138..357358 (-) Length   406 a.a.
NCBI ID   WP_415719993.1    Uniprot ID   -
Organism   MAG: Photobacterium ganghwense isolate daa05ea6-4f3f-4f7c-82d4-3ed073323da5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 351138..362358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNALX_RS01770 mutT 352887..353285 (+) 399 WP_047886947.1 8-oxo-dGTP diphosphatase MutT -
  ACNALX_RS01775 yacG 353378..353596 (-) 219 WP_047887028.1 DNA gyrase inhibitor YacG -
  ACNALX_RS01780 zapD 353605..354342 (-) 738 WP_047886946.1 cell division protein ZapD -
  ACNALX_RS01785 coaE 354367..354981 (-) 615 WP_047886945.1 dephospho-CoA kinase -
  ACNALX_RS01790 pilD 354986..355855 (-) 870 WP_273857551.1 prepilin peptidase Machinery gene
  ACNALX_RS01795 pilC 356138..357358 (-) 1221 WP_415719993.1 type II secretion system F family protein Machinery gene
  ACNALX_RS01800 pilB 357412..359112 (-) 1701 WP_415719994.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACNALX_RS01805 - 359112..359555 (-) 444 WP_217391891.1 pilin -
  ACNALX_RS01810 nadC 360029..360916 (-) 888 WP_415720045.1 carboxylating nicotinate-nucleotide diphosphorylase -
  ACNALX_RS01815 ampD 361216..361779 (+) 564 WP_047886939.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 45034.91 Da        Isoelectric Point: 10.1749

>NTDB_id=1170626 ACNALX_RS01795 WP_415719993.1 356138..357358(-) (pilC) [MAG: Photobacterium ganghwense isolate daa05ea6-4f3f-4f7c-82d4-3ed073323da5]
MAQAGKIRYYHWRGVNPSGKKLSGVILGFQEQEVRAKLTEQMIQVKKIRHRNPSTFSKLKNQLKPTDVTTITRQLATMIN
AGVPVVQALKLMADSHHKAEARATLTQVSVQVESGSSLARAMRNSSPLFDTFYCDLVSTGEQTGHLGQVFDRIATYREKN
EAMRKKVIKAMIYPSIVTLTAVGVTVMMLLFVIPQFAGIFNNFGAELPWFTRQVIAASDWLVDSGKYLAILMLLGFITLR
YSYQRSAPLRYRWHRSMLKIPVIGEVLLKATVARFARTLATTFSAGIPLLSGLQSAAKTAGNLYIEKAAMEAHSSTASGM
PLHIALRQSDVFPELMLQMTMIGEESGSLDDMLNKMAMFYEDDVDNTVDNLGKILEPLIIIFLGTVVGGLLVAMYMPIFK
LMSVIG

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=1170626 ACNALX_RS01795 WP_415719993.1 356138..357358(-) (pilC) [MAG: Photobacterium ganghwense isolate daa05ea6-4f3f-4f7c-82d4-3ed073323da5]
ATGGCGCAAGCCGGAAAAATCCGTTACTACCACTGGCGGGGGGTTAACCCGTCAGGCAAAAAGCTCTCCGGGGTGATCCT
TGGTTTCCAGGAGCAGGAAGTCAGGGCCAAGCTCACAGAGCAGATGATCCAGGTAAAAAAAATTCGCCACCGTAACCCGT
CTACGTTCAGTAAACTAAAAAATCAGCTGAAGCCAACCGATGTTACGACCATTACCCGTCAACTGGCGACTATGATTAAC
GCCGGCGTTCCCGTCGTCCAGGCGCTCAAACTCATGGCCGACAGCCATCACAAAGCAGAAGCACGCGCAACACTGACCCA
GGTATCCGTCCAGGTCGAGTCTGGCTCCTCTCTCGCCCGGGCGATGCGAAACAGCTCCCCACTGTTTGATACCTTCTATT
GCGACCTTGTCAGCACCGGCGAACAAACCGGCCATTTGGGCCAGGTATTTGACCGGATCGCGACCTATCGGGAAAAAAAT
GAAGCCATGCGGAAAAAAGTGATCAAAGCTATGATCTATCCATCCATCGTCACGCTGACAGCCGTCGGCGTAACGGTCAT
GATGCTGCTGTTTGTCATTCCGCAGTTCGCTGGTATTTTCAATAACTTTGGTGCAGAGTTGCCGTGGTTTACCCGTCAGG
TCATTGCGGCTTCTGACTGGTTGGTTGATTCCGGGAAATACCTGGCCATCCTGATGTTGCTGGGATTTATCACGTTACGT
TACAGCTACCAGCGTTCTGCCCCTCTGCGCTATCGCTGGCACCGCTCTATGCTCAAGATTCCGGTGATTGGCGAGGTATT
ACTGAAAGCCACAGTCGCAAGGTTTGCCCGCACCCTCGCAACCACTTTCAGTGCAGGTATCCCATTGCTCAGCGGGTTAC
AGTCCGCGGCAAAAACTGCCGGTAACCTGTATATCGAAAAAGCCGCGATGGAGGCCCACAGTAGCACAGCTTCAGGCATG
CCTTTACATATTGCATTACGCCAGAGCGATGTATTTCCTGAACTCATGCTGCAAATGACGATGATTGGCGAGGAGTCCGG
CTCTCTGGACGATATGCTCAATAAAATGGCGATGTTTTATGAAGATGATGTCGATAATACCGTCGACAACCTGGGAAAAA
TTCTTGAGCCCCTGATCATTATTTTCCTGGGAACGGTTGTTGGCGGATTACTCGTTGCCATGTATATGCCGATATTCAAA
CTGATGAGTGTGATTGGGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

54.75

98.522

0.539
  pilC Vibrio campbellii strain DS40M4

52.357

99.261

0.52
  pilC Pseudomonas stutzeri DSM 10701

43.902

100

0.443
  pilG Neisseria meningitidis 44/76-A

42.469

99.754

0.424
  pilG Neisseria gonorrhoeae MS11

41.872

100

0.419
  pilC Acinetobacter baylyi ADP1

39.95

99.261

0.397
  pilC Acinetobacter baumannii D1279779

39.295

97.783

0.384
  pilC Legionella pneumophila strain ERS1305867

39.196

98.03

0.384

Multiple sequence alignment