Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   ACNALX_RS01790 Genome accession   NZ_OZ223210
Coordinates   354986..355855 (-) Length   289 a.a.
NCBI ID   WP_273857551.1    Uniprot ID   -
Organism   MAG: Photobacterium ganghwense isolate daa05ea6-4f3f-4f7c-82d4-3ed073323da5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 349986..360855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNALX_RS01765 secA 350057..352774 (+) 2718 WP_047886948.1 preprotein translocase subunit SecA -
  ACNALX_RS01770 mutT 352887..353285 (+) 399 WP_047886947.1 8-oxo-dGTP diphosphatase MutT -
  ACNALX_RS01775 yacG 353378..353596 (-) 219 WP_047887028.1 DNA gyrase inhibitor YacG -
  ACNALX_RS01780 zapD 353605..354342 (-) 738 WP_047886946.1 cell division protein ZapD -
  ACNALX_RS01785 coaE 354367..354981 (-) 615 WP_047886945.1 dephospho-CoA kinase -
  ACNALX_RS01790 pilD 354986..355855 (-) 870 WP_273857551.1 prepilin peptidase Machinery gene
  ACNALX_RS01795 pilC 356138..357358 (-) 1221 WP_415719993.1 type II secretion system F family protein Machinery gene
  ACNALX_RS01800 pilB 357412..359112 (-) 1701 WP_415719994.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACNALX_RS01805 - 359112..359555 (-) 444 WP_217391891.1 pilin -

Sequence

Protein


Download         Length: 289 a.a.        Molecular weight: 32311.64 Da        Isoelectric Point: 6.6766

>NTDB_id=1170625 ACNALX_RS01790 WP_273857551.1 354986..355855(-) (pilD) [MAG: Photobacterium ganghwense isolate daa05ea6-4f3f-4f7c-82d4-3ed073323da5]
MELLILYPWLFPVFAAVFGLLVGSFLNVVIYRLPIMMERQWKADCAECFPEFGSIQETGPFNLSIPRSRCPHCQHPISMW
ENIPVVSWLLLKGRCKNCQAKISIRYPLVELFTAAIATTVALTLPHSEWALAVIFFSFALIALTFIDIDKMLLPDQITLP
LMWAGLLMALLGFSPVSLTDAVIGAMAGYLSLWSLYWTFKLLTGKEGMGYGDFKLLAALGAWLGWQLLPFVVLLSSLVGA
ICGIILMRVQRSDSQTPFSFGPYLAIAGWIAILWGEPLLNWYLTSYLGM

Nucleotide


Download         Length: 870 bp        

>NTDB_id=1170625 ACNALX_RS01790 WP_273857551.1 354986..355855(-) (pilD) [MAG: Photobacterium ganghwense isolate daa05ea6-4f3f-4f7c-82d4-3ed073323da5]
ATGGAACTGCTGATCCTCTATCCCTGGCTTTTTCCTGTTTTTGCGGCTGTTTTTGGACTGCTTGTCGGCAGTTTCCTGAA
TGTCGTCATTTATCGCCTACCTATCATGATGGAGCGGCAGTGGAAAGCCGACTGCGCCGAGTGTTTTCCGGAATTTGGTT
CTATTCAAGAAACCGGCCCATTCAACCTCAGCATTCCCCGCTCGCGCTGTCCACATTGCCAGCATCCCATCAGCATGTGG
GAAAATATCCCGGTTGTCAGCTGGCTGCTGCTCAAGGGGCGCTGCAAGAATTGCCAGGCAAAAATCAGCATCCGTTACCC
GCTGGTAGAGCTGTTTACTGCCGCCATTGCTACGACAGTGGCGCTGACGCTACCGCACTCTGAATGGGCGCTTGCCGTTA
TCTTTTTCAGCTTTGCATTGATTGCCCTGACGTTTATCGACATTGACAAAATGCTGCTACCGGATCAAATTACGCTGCCG
TTGATGTGGGCTGGCTTGCTGATGGCGCTGCTTGGCTTTTCGCCAGTCAGCCTGACTGATGCCGTCATCGGCGCCATGGC
GGGCTACCTGTCGCTGTGGAGCCTGTACTGGACGTTTAAGCTGCTCACCGGCAAAGAAGGAATGGGCTACGGGGATTTTA
AACTTCTCGCCGCACTGGGAGCCTGGCTTGGCTGGCAACTGCTGCCTTTTGTCGTACTGCTTTCTTCTTTGGTTGGGGCA
ATCTGCGGCATCATTCTGATGCGGGTGCAGCGTTCCGACAGCCAAACACCGTTTTCATTTGGCCCCTATCTGGCGATTGC
AGGCTGGATAGCCATCTTGTGGGGTGAGCCACTGCTCAACTGGTACCTGACTTCATATCTGGGAATGTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(135-244)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

64.583

99.654

0.644
  pilD Vibrio campbellii strain DS40M4

61.592

100

0.616
  pilD Neisseria gonorrhoeae MS11

50.523

99.308

0.502
  pilD Acinetobacter baumannii D1279779

50.185

93.772

0.471
  pilD Acinetobacter nosocomialis M2

49.815

93.772

0.467

Multiple sequence alignment