Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACLV7D_RS03590 Genome accession   NZ_OZ217345
Coordinates   697263..697733 (+) Length   156 a.a.
NCBI ID   WP_000609606.1    Uniprot ID   A0A0U0CT68
Organism   Streptococcus mitis isolate S. mitis F22     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 692263..702733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7D_RS03585 (SMIF22_06980) rpsF 696961..697251 (+) 291 WP_001151785.1 30S ribosomal protein S6 -
  ACLV7D_RS03590 (SMIF22_06990) ssbA 697263..697733 (+) 471 WP_000609606.1 single-stranded DNA-binding protein SsbA Machinery gene
  ACLV7D_RS03595 (SMIF22_07000) rpsR 697765..698004 (+) 240 WP_000068664.1 30S ribosomal protein S18 -
  ACLV7D_RS03600 (SMIF22_07010) - 698203..698706 (+) 504 WP_218764236.1 GNAT family N-acetyltransferase -
  ACLV7D_RS03605 (SMIF22_07020) - 698789..700189 (+) 1401 WP_218764237.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  ACLV7D_RS03610 (SMIF22_07030) - 700191..700553 (+) 363 WP_023943268.1 S1 RNA-binding domain-containing protein -
  ACLV7D_RS03615 (SMIF22_07040) - 700606..701355 (+) 750 WP_218764238.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  ACLV7D_RS03620 (SMIF22_07050) - 701345..701629 (+) 285 WP_218764239.1 GIY-YIG nuclease family protein -
  ACLV7D_RS03625 (SMIF22_07060) - 701715..702650 (+) 936 WP_218764240.1 manganese-dependent inorganic pyrophosphatase -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17352.20 Da        Isoelectric Point: 4.9164

>NTDB_id=1170363 ACLV7D_RS03590 WP_000609606.1 697263..697733(+) (ssbA) [Streptococcus mitis isolate S. mitis F22]
MINNVVLVGRMTRDAELRYTPSNVAVATFTLAVNRTFKSQNGEREADFINVVMWRQQAENLANWAKKGSLIGVTGRIQTR
SYDNQQGQRVYVTEVVAENFQMLESRSVREGHTGGAYSAPTANYSAPTNSVPDFSRDENPFGATNPLDISDDDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=1170363 ACLV7D_RS03590 WP_000609606.1 697263..697733(+) (ssbA) [Streptococcus mitis isolate S. mitis F22]
ATGATTAACAATGTTGTACTTGTAGGGCGTATGACACGTGACGCTGAGTTGCGTTATACCCCATCAAATGTAGCAGTTGC
GACTTTTACTCTTGCAGTAAACCGTACATTTAAGAGTCAAAATGGCGAACGTGAGGCTGATTTTATCAATGTCGTTATGT
GGCGCCAACAGGCTGAGAACCTTGCTAATTGGGCTAAAAAAGGCTCACTTATCGGGGTGACAGGCCGTATCCAGACTCGT
AGTTACGATAACCAGCAAGGACAACGTGTCTACGTGACAGAGGTCGTGGCTGAGAATTTCCAAATGTTGGAAAGCCGTAG
TGTGCGTGAGGGTCACACAGGTGGAGCTTACTCTGCCCCAACTGCAAACTATTCAGCACCTACAAATTCAGTACCAGACT
TTTCACGTGATGAAAATCCATTTGGAGCAACAAATCCATTGGATATTTCAGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0U0CT68

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.233

100

0.609
  ssb Latilactobacillus sakei subsp. sakei 23K

53.409

100

0.603
  ssbB/cilA Streptococcus pneumoniae TIGR4

51.282

75

0.385
  ssbB Bacillus subtilis subsp. subtilis str. 168

55.66

67.949

0.378
  ssbB/cilA Streptococcus pneumoniae R6

50.427

75

0.378
  ssbB/cilA Streptococcus mitis SK321

50.427

75

0.378
  ssbB/cilA Streptococcus mitis NCTC 12261

50.427

75

0.378
  ssbB/cilA Streptococcus pneumoniae Rx1

50.427

75

0.378
  ssbB/cilA Streptococcus pneumoniae D39

50.427

75

0.378
  ssbB Streptococcus sobrinus strain NIDR 6715-7

54.128

69.872

0.378

Multiple sequence alignment